Oncogenic signaling pathways in the cancer genome atlas F Sanchez-Vega, M Mina, J Armenia, WK Chatila, A Luna, KC La, ... Cell 173 (2), 321-337. e10, 2018 | 2538 | 2018 |
Comprehensive characterization of cancer driver genes and mutations MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ... Cell 173 (2), 371-385. e18, 2018 | 2230 | 2018 |
Pan-cancer landscape of aberrant DNA methylation across human tumors S Saghafinia, M Mina, N Riggi, D Hanahan, G Ciriello Cell reports 25 (4), 1066-1080. e8, 2018 | 286 | 2018 |
Semantic similarity analysis of protein data: assessment with biological features and issues PH Guzzi, M Mina, C Guerra, M Cannataro Briefings in bioinformatics 13 (5), 569-585, 2012 | 260 | 2012 |
Machine learning detects pan-cancer ras pathway activation in the cancer genome atlas GP Way, F Sanchez-Vega, K La, J Armenia, WK Chatila, A Luna, ... Cell reports 23 (1), 172-180. e3, 2018 | 154 | 2018 |
LPS-induced TNF-α factor mediates pro-inflammatory and pro-fibrogenic pattern in non-alcoholic fatty liver disease S Ceccarelli, N Panera, M Mina, D Gnani, C De Stefanis, A Crudele, ... Oncotarget 6 (39), 41434, 2015 | 144 | 2015 |
Tumor-infiltrating T lymphocytes improve clinical outcome of therapy-resistant neuroblastoma M Mina, R Boldrini, A Citti, P Romania, V D'Alicandro, M De Ioris, ... Oncoimmunology 4 (9), e1019981, 2015 | 136 | 2015 |
EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains MC Donaldson-Collier, S Sungalee, M Zufferey, D Tavernari, ... Nature genetics 51 (3), 517-528, 2019 | 126 | 2019 |
AlignNemo: a local network alignment method to integrate homology and topology G Ciriello, M Mina, PH Guzzi, M Cannataro, C Guerra PloS one 7 (6), e38107, 2012 | 118 | 2012 |
Conditional selection of genomic alterations dictates cancer evolution and oncogenic dependencies M Mina, F Raynaud, D Tavernari, E Battistello, S Sungalee, S Saghafinia, ... Cancer cell 32 (2), 155-168. e6, 2017 | 115 | 2017 |
The oncogenic action of NRF2 depends on de-glycation by fructosamine-3-kinase VR Sanghvi, J Leibold, M Mina, P Mohan, M Berishaj, Z Li, MM Miele, ... Cell 178 (4), 807-819. e21, 2019 | 112 | 2019 |
PD-L1 is a therapeutic target of the bromodomain inhibitor JQ1 and, combined with HLA class I, a promising prognostic biomarker in neuroblastoma O Melaiu, M Mina, M Chierici, R Boldrini, G Jurman, P Romania, ... Clinical Cancer Research 23 (15), 4462-4472, 2017 | 100 | 2017 |
Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability F Raynaud, M Mina, D Tavernari, G Ciriello PLoS genetics 14 (9), e1007669, 2018 | 96 | 2018 |
Cell-autonomous inflammation of BRCA1-deficient ovarian cancers drives both tumor-intrinsic immunoreactivity and immune resistance via STING M Bruand, D Barras, M Mina, E Ghisoni, M Morotti, E Lanitis, N Fahr, ... Cell reports 36 (3), 2021 | 82 | 2021 |
Nongenetic evolution drives lung adenocarcinoma spatial heterogeneity and progression D Tavernari, E Battistello, E Dheilly, AS Petruzzella, M Mina, ... Cancer discovery 11 (6), 1490-1507, 2021 | 82 | 2021 |
Cathepsin S regulates antigen processing and T cell activity in non-Hodgkin lymphoma E Dheilly, E Battistello, N Katanayeva, S Sungalee, J Michaux, G Duns, ... Cancer cell 37 (5), 674-689. e12, 2020 | 79 | 2020 |
Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes Y Liu, L Nanni, S Sungalee, M Zufferey, D Tavernari, M Mina, S Ceri, ... Nature communications 12 (1), 2439, 2021 | 71 | 2021 |
A transcribed enhancer dictates mesendoderm specification in pluripotency M Alexanian, D Maric, SP Jenkinson, M Mina, CE Friedman, CC Ting, ... Nature communications 8 (1), 1806, 2017 | 66 | 2017 |
Uncoupling protein 2 reprograms the tumor microenvironment to support the anti-tumor immune cycle WC Cheng, YC Tsui, S Ragusa, VH Koelzer, M Mina, F Franco, H Läubli, ... Nature immunology 20 (2), 206-217, 2019 | 60 | 2019 |
Improving the robustness of local network alignment: design and extensive assessment of a Markov Clustering-based approach M Mina, P Guzzi Computational Biology and Bioinformatics, IEEE/ACM Transactions on 11 (3 …, 2014 | 58 | 2014 |