Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing S Sadegh, J Matschinske, DB Blumenthal, G Galindez, T Kacprowski, ... Nature communications 11 (1), 3518, 2020 | 170 | 2020 |
Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies G Galindez, J Matschinske, TD Rose, S Sadegh, M Salgado-Albarrán, ... Nature Computational Science 1 (1), 33-41, 2021 | 108 | 2021 |
Privacy-preserving artificial intelligence techniques in biomedicine R Torkzadehmahani, R Nasirigerdeh, DB Blumenthal, T Kacprowski, ... Methods of information in medicine 61 (S 01), e12-e27, 2022 | 47 | 2022 |
sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies R Nasirigerdeh, R Torkzadehmahani, J Matschinske, T Frisch, M List, ... Genome Biology 23 (1), 32, 2022 | 40 | 2022 |
Flimma: a federated and privacy-aware tool for differential gene expression analysis O Zolotareva, R Nasirigerdeh, J Matschinske, R Torkzadehmahani, ... Genome biology 22 (1), 1-26, 2021 | 18* | 2021 |
The FeatureCloud platform for federated learning in biomedicine: unified approach J Matschinske, J Späth, M Bakhtiari, N Probul, MMK Majdabadi, ... Journal of Medical Internet Research 25 (1), e42621, 2023 | 13* | 2023 |
Privacy-aware multi-institutional time-to-event studies J Späth, J Matschinske, FK Kamanu, SA Murphy, O Zolotareva, ... PLOS Digital Health 1 (9), e0000101, 2022 | 7 | 2022 |
dsMTL: a computational framework for privacy-preserving, distributed multi-task machine learning H Cao, Y Zhang, J Baumbach, PR Burton, D Dwyer, N Koutsouleris, ... Bioinformatics 38 (21), 4919-4926, 2022 | 6 | 2022 |
CTCFL regulates the PI3K-Akt pathway and it is a target for personalized ovarian cancer therapy M Salgado-Albarrán, J Späth, R González-Barrios, J Baumbach, ... npj Systems Biology and Applications 8 (1), 5, 2022 | 5 | 2022 |
Machine learning–based integration of network features and chemical structure of compounds for SARS‐CoV‐2 drug effect analysis J Späth, RS Wang, M Humphrey, J Baumbach, J Loscalzo CPT: Pharmacometrics & Systems Pharmacology 13 (2), 257-269, 2024 | 1 | 2024 |
Privacy-Preserving Federated Survival Support Vector Machines for Cross-Institutional Time-To-Event Analysis: Algorithm Development and Validation J Späth, Z Sewald, N Probul, M Berland, M Almeida, N Pons, ... JMIR AI 3 (1), e47652, 2024 | | 2024 |
Targeting infectious diseases: The CoVex example S Sadegh, J Matschinske, DB Blumenthal, G Galindez, T Kacprowski, ... RExPO22, 2022 | | 2022 |