CellMarker: a manually curated resource of cell markers in human and mouse X Zhang, Y Lan, J Xu, F Quan, E Zhao, C Deng, T Luo, L Xu, G Liao, ... Nucleic acids research 47 (D1), D721-D728, 2019 | 1004 | 2019 |
TIP: a web server for resolving tumor immunophenotype profiling L Xu, C Deng, B Pang, X Zhang, W Liu, G Liao, H Yuan, P Cheng, F Li, ... Cancer research 78 (23), 6575-6580, 2018 | 413 | 2018 |
CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data C Hu, T Li, Y Xu, X Zhang, F Li, J Bai, J Chen, W Jiang, K Yang, Q Ou, X Li, ... Nucleic acids research 51 (D1), D870-D876, 2023 | 226 | 2023 |
A comprehensive overview of lncRNA annotation resources J Xu, J Bai, X Zhang, Y Lv, Y Gong, L Liu, H Zhao, F Yu, Y Ping, G Zhang, ... Briefings in bioinformatics 18 (2), 236-249, 2017 | 160 | 2017 |
Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability Y Deng, S Luo, C Deng, T Luo, W Yin, H Zhang, Y Zhang, X Zhang, Y Lan, ... Briefings in Bioinformatics 20 (1), 254-266, 2019 | 58 | 2019 |
Systematically characterizing dysfunctional long intergenic non-coding RNAs in multiple brain regions of major psychosis J Hu, J Xu, L Pang, H Zhao, F Li, Y Deng, L Liu, Y Lan, X Zhang, T Zhao, ... Oncotarget 7 (44), 71087, 2016 | 42 | 2016 |
Sex difference of mutation clonality in diffuse glioma evolution H Zhang, J Liao, X Zhang, E Zhao, X Liang, S Luo, J Shi, F Yu, J Xu, ... Neuro-oncology 21 (2), 201-213, 2019 | 41 | 2019 |
LnChrom: a resource of experimentally validated lncRNA–chromatin interactions in human and mouse F Yu, G Zhang, A Shi, J Hu, F Li, X Zhang, Y Zhang, J Huang, Y Xiao, X Li, ... Database 2018, bay039, 2018 | 38 | 2018 |
Identifying cancer driver lncRNAs bridged by functional effectors through integrating multi-omics data in human cancers Y Zhang, G Liao, J Bai, X Zhang, L Xu, C Deng, M Yan, A Xie, T Luo, ... Molecular Therapy-Nucleic Acids 17, 362-373, 2019 | 27 | 2019 |
Cooperative genomic alteration network reveals molecular classification across 12 major cancer types H Zhang, Y Deng, Y Zhang, Y Ping, H Zhao, L Pang, X Zhang, L Wang, ... Nucleic acids research 45 (2), 567-582, 2017 | 25 | 2017 |
A pan‐cancer atlas of cancer hallmark‐associated candidate driver lnc RNA s Y Deng, S Luo, X Zhang, C Zou, H Yuan, G Liao, L Xu, C Deng, Y Lan, ... Molecular oncology 12 (11), 1980-2005, 2018 | 23 | 2018 |
Combination of multiple tumor-infiltrating immune cells predicts clinical outcome in colon cancer X Zhang, F Quan, J Xu, Y Xiao, X Li, Y Li Clinical Immunology 215, 108412, 2020 | 21 | 2020 |
Systematic assessment of transcriptomic biomarkers for immune checkpoint blockade response in cancer immunotherapy S Sun, L Xu, X Zhang, L Pang, Z Long, C Deng, J Zhu, S Zhou, L Wan, ... Cancers 13 (7), 1639, 2021 | 16 | 2021 |
SEECancer: a resource for somatic events in evolution of cancer genome H Zhang, S Luo, X Zhang, J Liao, F Quan, E Zhao, C Zhou, F Yu, W Yin, ... Nucleic Acids Research 46 (D1), D1018-D1026, 2018 | 10 | 2018 |
Identifying key somatic copy number alterations driving dysregulation of cancer hallmarks in lower-grade glioma Y Zhou, S Wang, H Yan, B Pang, X Zhang, L Pang, Y Wang, J Xu, J Hu, ... Frontiers in Genetics 12, 654736, 2021 | 6 | 2021 |
Annotation of cell types (ACT): a convenient web server for cell type annotation F Quan, X Liang, M Cheng, H Yang, K Liu, S He, S Sun, M Deng, Y He, ... Genome Medicine 15 (1), 91, 2023 | 4 | 2023 |
Systemically Identifying Triple-Negative Breast Cancer Subtype-Specific Prognosis Signatures, Based on Single-Cell RNA-Seq Data K Xing, B Zhang, Z Wang, Y Zhang, T Chai, J Geng, X Qin, XS Chen, ... Cells 12 (3), 367, 2023 | 2 | 2023 |
Identification of Prognostic Gene Signatures by Developing a scRNA-Seq-Based Integration Approach to Predict Recurrence and Chemotherapy Benefit in Stage II–III Colorectal Cancer Z Wang, K Xing, B Zhang, Y Zhang, T Chai, J Geng, X Qin, X Zhang, C Xu International journal of molecular sciences 23 (20), 12460, 2022 | 2 | 2022 |
Prognostic impact of a lymphocyte activation-associated gene signature in GBM based on transcriptome analysis Y Lan, E Zhao, X Zhang, X Zhu, L Wan, A Suru, Y Ping, Y Wang PeerJ 9, e12070, 2021 | 2 | 2021 |
Decoding the associations between cell functional states in head and neck cancer based on single-cell transcriptome H Yuan, M Yan, X Liang, W Liu, S He, S Sun, X Zhang, Y Lan Oral Oncology 134, 106110, 2022 | 1 | 2022 |