A systems biology view of cancer R Laubenbacher, V Hower, A Jarrah, SV Torti, V Shulaev, P Mendes, ... Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1796 (2), 129-139, 2009 | 124 | 2009 |
Systems modeling of molecular mechanisms controlling cytokine-driven CD4+ T cell differentiation and phenotype plasticity A Carbo, R Hontecillas, B Kronsteiner, M Viladomiu, M Pedragosa, P Lu, ... PLoS computational biology 9 (4), e1003027, 2013 | 122 | 2013 |
Gene regulatory network modeling of macrophage differentiation corroborates the continuum hypothesis of polarization states A Palma, AS Jarrah, P Tieri, G Cesareni, F Castiglione Frontiers in physiology 9, 417083, 2018 | 120 | 2018 |
A mathematical framework for agent based models of complex biological networks F Hinkelmann, D Murrugarra, AS Jarrah, R Laubenbacher Bulletin of mathematical biology 73 (7), 1583-1602, 2011 | 117 | 2011 |
Reverse-engineering of polynomial dynamical systems AS Jarrah, R Laubenbacher, B Stigler, M Stillman Advances in Applied Mathematics 39 (4), 477-489, 2007 | 114 | 2007 |
Polynomial algebra of discrete models in systems biology A Veliz-Cuba, AS Jarrah, R Laubenbacher Bioinformatics 26 (13), 1637-1643, 2010 | 113 | 2010 |
Nested canalyzing, unate cascade, and polynomial functions AS Jarrah, B Raposa, R Laubenbacher Physica D: Nonlinear Phenomena 233 (2), 167-174, 2007 | 112 | 2007 |
The dynamics of conjunctive and disjunctive Boolean network models AS Jarrah, R Laubenbacher, A Veliz-Cuba Bulletin of mathematical biology 72, 1425-1447, 2010 | 80 | 2010 |
Simulating epstein-barr virus infection with c-immsim F Castiglione, K Duca, A Jarrah, R Laubenbacher, D Hochberg, ... Bioinformatics 23 (11), 1371-1377, 2007 | 75 | 2007 |
The effect of negative feedback loops on the dynamics of Boolean networks E Sontag, A Veliz-Cuba, R Laubenbacher, AS Jarrah Biophysical Journal 95 (2), 518-526, 2008 | 74 | 2008 |
Monomial dynamical systems over finite fields O Colón-Reyes, A Jarrah, R Laubenbacher, B Sturmfels arXiv preprint math/0605439, 2006 | 61 | 2006 |
A mathematical formalism for agent-based modeling R Laubenbacher, AS Jarrah, H Mortveit, SS Ravi arXiv preprint arXiv:0801.0249, 2007 | 52 | 2007 |
A virtual look at Epstein–Barr virus infection: simulation mechanism M Shapiro, KA Duca, K Lee, E Delgado-Eckert, J Hawkins, AS Jarrah, ... Journal of theoretical biology 252 (4), 633-648, 2008 | 46 | 2008 |
A Gröbner fan method for biochemical network modeling ES Dimitrova, AS Jarrah, R Laubenbacher, B Stigler Proceedings of the 2007 international symposium on Symbolic and algebraic …, 2007 | 44 | 2007 |
A new approach to computing hedonic equilibria and investigating the properties of locational sorting models NV Kuminoff, AS Jarrah Journal of Urban Economics 67 (3), 322-335, 2010 | 41 | 2010 |
A virtual look at Epstein–Barr virus infection: biological interpretations KA Duca, M Shapiro, E Delgado-Eckert, V Hadinoto, AS Jarrah, ... PLoS pathogens 3 (10), e137, 2007 | 40 | 2007 |
Parameter estimation for Boolean models of biological networks E Dimitrova, LD García-Puente, F Hinkelmann, AS Jarrah, ... Theoretical Computer Science 412 (26), 2816-2826, 2011 | 37 | 2011 |
The Sibirsky component of the center variety of polynomial differential systems AS Jarrah, R Laubenbacher, V Romanovski Journal of Symbolic Computation 35 (5), 577-589, 2003 | 34 | 2003 |
An algebra-based method for inferring gene regulatory networks P Vera-Licona, A Jarrah, LD Garcia-Puente, J McGee, R Laubenbacher BMC systems biology 8, 1-16, 2014 | 31 | 2014 |
Agent-based modeling, Mathematical formalism for R Laubenbacher, AS Jarrah, HS Mortveit, SS Ravi Complex Social and Behavioral Systems: Game Theory and Agent-Based Models …, 2020 | 24 | 2020 |