Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Arabidopsis Genome Initiative Nature 408 (6814), 796, 2000 | 11174 | 2000 |
AUGUSTUS: ab initio prediction of alternative transcripts M Stanke, O Keller, I Gunduz, A Hayes, S Waack, B Morgenstern Nucleic acids research 34 (suppl_2), W435-W439, 2006 | 2057 | 2006 |
The genome of the model beetle and pest Tribolium castaneum Tribolium Genome Sequencing Consortium Nature 452 (7190), 949, 2008 | 1459* | 2008 |
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints M Stanke, B Morgenstern Nucleic acids research 33 (suppl_2), W465-W467, 2005 | 1407 | 2005 |
AUGUSTUS: a web server for gene finding in eukaryotes M Stanke, R Steinkamp, S Waack, B Morgenstern Nucleic acids research 32 (suppl_2), W309-W312, 2004 | 1280 | 2004 |
MIPS: a database for genomes and protein sequences HW Mewes, D Frishman, U Güldener, G Mannhaupt, K Mayer, M Mokrejs, ... Nucleic acids research 30 (1), 31-34, 2002 | 1196 | 2002 |
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources M Stanke, O Schöffmann, B Morgenstern, S Waack BMC bioinformatics 7, 62, 2006 | 1187 | 2006 |
Comparative analysis of the complete genome sequence of the plant growth–promoting bacterium Bacillus amyloliquefaciens FZB42 XH Chen, A Koumoutsi, R Scholz, A Eisenreich, K Schneider, ... Nature biotechnology 25 (9), 1007-1014, 2007 | 993 | 2007 |
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. B Morgenstern Bioinformatics (Oxford, England) 15 (3), 211-218, 1999 | 936 | 1999 |
Phylogenomics revives traditional views on deep animal relationships H Philippe, R Derelle, P Lopez, K Pick, C Borchiellini, N Boury-Esnault, ... Current Biology 19 (8), 706-712, 2009 | 778 | 2009 |
DIALIGN: finding local similarities by multiple sequence alignment. B Morgenstern, K Frech, A Dress, T Werner Bioinformatics (Oxford, England) 14 (3), 290-294, 1998 | 524 | 1998 |
Multiple DNA and protein sequence alignment based on segment-to-segment comparison B Morgenstern, A Dress, T Werner Proceedings of the National Academy of Sciences 93 (22), 12098-12103, 1996 | 440 | 1996 |
Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships KS Pick, H Philippe, F Schreiber, D Erpenbeck, DJ Jackson, P Wrede, ... Molecular biology and evolution 27 (9), 1983-1987, 2010 | 401 | 2010 |
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome M Stanke, A Tzvetkova, B Morgenstern Genome Biol 7 (Suppl 1), S11, 2006 | 354 | 2006 |
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ B Morgenstern Nucleic acids research 32 (suppl_2), W33-W36, 2004 | 327 | 2004 |
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment AR Subramanian, M Kaufmann, B Morgenstern Algorithms Mol Biol 3 (6), 2008 | 308 | 2008 |
Fast and sensitive multiple alignment of large genomic sequences M Brudno, M Chapman, B Göttgens, S Batzoglou, B Morgenstern BMC bioinformatics 4 (1), 66, 2003 | 235 | 2003 |
DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment AR Subramanian, J Weyer-Menkhoff, M Kaufmann, B Morgenstern BMC bioinformatics 6, 66, 2005 | 233 | 2005 |
Benchmarking of alignment-free sequence comparison methods A Zielezinski, HZ Girgis, G Bernard, CA Leimeister, K Tang, T Dencker, ... Genome Biology 20, 114, 2019 | 196 | 2019 |
Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems C Schmeisser, H Liesegang, D Krysciak, N Bakkou, A Le Quéré, ... Applied and environmental microbiology 75 (12), 4035-4045, 2009 | 195 | 2009 |