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C. Keith Cassidy
标题
引用次数
引用次数
年份
Molecular dynamics simulations of large macromolecular complexes
JR Perilla, BC Goh, CK Cassidy, B Liu, RC Bernardi, T Rudack, H Yu, ...
Current opinion in structural biology 31, 64-74, 2015
4482015
CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling
CK Cassidy, BA Himes, FJ Alvarez, J Ma, G Zhao, JR Perilla, K Schulten, ...
Elife 4, e08419, 2015
1202015
PyLipID: A python package for analysis of protein–lipid interactions from molecular dynamics simulations
W Song, RA Corey, TB Ansell, CK Cassidy, MR Horrell, AL Duncan, ...
Journal of chemical theory and computation 18 (2), 1188-1201, 2022
882022
Computational methodologies for real-space structural refinement of large macromolecular complexes
BC Goh, JA Hadden, RC Bernardi, A Singharoy, R McGreevy, T Rudack, ...
Annual Review of Biophysics 45, 253-278, 2016
832016
Dynamics of an LPS translocon induced by substrate and an antimicrobial peptide
F Fiorentino, JB Sauer, X Qiu, RA Corey, CK Cassidy, B Mynors-Wallis, ...
Nature chemical biology 17 (2), 187-195, 2021
522021
Complete structure of the chemosensory array core signalling unit in an E. coli minicell strain
A Burt, CK Cassidy, P Ames, M Bacia-Verloop, M Baulard, K Huard, ...
Nature communications 11 (1), 743, 2020
502020
Structure and dynamics of the E. coli chemotaxis core signaling complex by cryo-electron tomography and molecular simulations
CK Cassidy, BA Himes, D Sun, J Ma, G Zhao, JS Parkinson, PJ Stansfeld, ...
Communications biology 3 (1), 24, 2020
492020
CheY's acetylation sites responsible for generating clockwise flagellar rotation in Escherichia coli
M Fraiberg, O Afanzar, CK Cassidy, A Gabashvili, K Schulten, Y Levin, ...
Molecular microbiology 95 (2), 231-244, 2015
412015
In Situ Conformational Changes of the Escherichia coli Serine Chemoreceptor in Different Signaling States
W Yang, CK Cassidy, P Ames, CA Diebolder, K Schulten, ...
MBio 10 (4), e00973-19, 2019
36*2019
The unconventional cytoplasmic sensing mechanism for ethanol chemotaxis in Bacillus subtilis
P Tohidifar, GA Bodhankar, S Pei, CK Cassidy, HE Walukiewicz, ...
MBio 11 (5), 10.1128/mbio. 02177-20, 2020
26*2020
Structure and activity of particulate methane monooxygenase arrays in methanotrophs
Y Zhu, CW Koo, CK Cassidy, MC Spink, T Ni, LC Zanetti-Domingues, ...
Nature communications 13 (1), 5221, 2022
212022
CryoEM-based hybrid modeling approaches for structure determination
CK Cassidy, BA Himes, Z Luthey-Schulten, P Zhang
Current opinion in microbiology 43, 14-23, 2018
212018
High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers
R Ouyang, AR Costa, CK Cassidy, A Otwinowska, VCJ Williams, A Latka, ...
Nature Communications 13 (1), 7241, 2022
162022
Structural basis for SMAC-mediated antagonism of caspase inhibition by the giant ubiquitin ligase BIRC6
L Dietz, CJ Ellison, C Riechmann, CK Cassidy, FD Felfoldi, ...
Science 379 (6637), 1112-1117, 2023
142023
Hexameric rings of the scaffolding protein CheW enhance response sensitivity and cooperativity in Escherichia coli chemoreceptor arrays
GE Piñas, MD DeSantis, CK Cassidy, JS Parkinson
Science signaling 15 (718), eabj1737, 2022
112022
A bacterial inflammation sensor regulates c-di-GMP signaling, adhesion, and biofilm formation
A Perkins, DA Tudorica, RD Teixeira, T Schirmer, L Zumwalt, OM Ogba, ...
MBio 12 (3), 10.1128/mbio. 00173-21, 2021
102021
Alternative Architecture of the E. coli Chemosensory Array
A Burt, CK Cassidy, PJ Stansfeld, I Gutsche
Biomolecules 11 (4), 495, 2021
82021
LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins
TB Ansell, W Song, CE Coupland, L Carrique, RA Corey, AL Duncan, ...
Nature Communications 14 (1), 7774, 2023
72023
Mechanisms of E. coli chemotaxis signaling pathways visualized using cryoET and computational approaches
K Hadjidemetriou, S Kaur, CK Cassidy, P Zhang
Biochemical Society Transactions 50 (6), 1595-1605, 2022
72022
GPU-accelerated molecular dynamics clustering analysis with OpenACC
JE Stone, JR Perilla, CK Cassidy, K Schulten
Parallel Programming with OpenACC, 215-240, 2017
72017
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