| Fast and sensitive protein alignment using DIAMOND B Buchfink, C Xie, DH Huson Nature methods 12 (1), 59-60, 2015 | 9490 | 2015 |
| CNV-seq, a new method to detect copy number variation using high-throughput sequencing C Xie, MT Tammi BMC bioinformatics 10, 1-9, 2009 | 665 | 2009 |
| Deep sequencing of 10,000 human genomes A Telenti, LCT Pierce, WH Biggs, J Di Iulio, EHM Wong, MM Fabani, ... Proceedings of the National Academy of Sciences 113 (42), 11901-11906, 2016 | 414 | 2016 |
| The role of quorum sensing signalling in EPS production and the assembly of a sludge community into aerobic granules CH Tan, KS Koh, C Xie, M Tay, Y Zhou, R Williams, WJ Ng, SA Rice, ... The ISME journal 8 (6), 1186-1197, 2014 | 386 | 2014 |
| Biofilm development and enhanced stress resistance of a model, mixed-species community biofilm KWK Lee, S Periasamy, M Mukherjee, C Xie, S Kjelleberg, SA Rice The ISME journal 8 (4), 894-907, 2014 | 381 | 2014 |
| The blood DNA virome in 8,000 humans A Moustafa, C Xie, E Kirkness, W Biggs, E Wong, Y Turpaz, K Bloom, ... PLoS pathogens 13 (3), e1006292, 2017 | 304 | 2017 |
| Identification of individuals by trait prediction using whole-genome sequencing data C Lippert, R Sabatini, MC Maher, EY Kang, S Lee, O Arikan, A Harley, ... Proceedings of the National Academy of Sciences 114 (38), 10166-10171, 2017 | 198 | 2017 |
| Community quorum sensing signalling and quenching: microbial granular biofilm assembly CH Tan, KS Koh, C Xie, J Zhang, XH Tan, GP Lee, Y Zhou, WJ Ng, ... npj Biofilms and Microbiomes 1 (1), 1-9, 2015 | 165 | 2015 |
| Fast and accurate HLA typing from short-read next-generation sequence data with xHLA C Xie, ZX Yeo, M Wong, J Piper, T Long, EF Kirkness, WH Biggs, K Bloom, ... Proceedings of the National Academy of Sciences 114 (30), 8059-8064, 2017 | 135 | 2017 |
| The BpsIR Quorum-Sensing System of Burkholderia pseudomallei Y Song, C Xie, YM Ong, YH Gan, KL Chua Journal of bacteriology 187 (2), 785-790, 2005 | 99 | 2005 |
| Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions Y Law, RH Kirkegaard, AA Cokro, X Liu, K Arumugam, C Xie, ... Scientific Reports 6 (1), 25719, 2016 | 85 | 2016 |
| A poor man’s BLASTX—high-throughput metagenomic protein database search using PAUDA DH Huson, C Xie Bioinformatics 30 (1), 38-39, 2014 | 81 | 2014 |
| RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys C Xie, CLW Goi, DH Huson, PFR Little, RBH Williams BMC bioinformatics 17, 277-282, 2016 | 34 | 2016 |
| Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll TC Jeffries, M Ostrowski, RB Williams, C Xie, RM Jensen, JJ Grzymski, ... Scientific Reports 5 (1), 15383, 2015 | 29 | 2015 |
| Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads DH Huson, R Tappu, AL Bazinet, C Xie, MP Cummings, K Nieselt, ... Microbiome 5, 1-10, 2017 | 28 | 2017 |
| Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data CL Goi, P Little, C Xie BMC genomics 14, 1-11, 2013 | 21 | 2013 |
| MetaScope-Fast and accurate identification of microbes in metagenomic sequencing data B Buchfink, DH Huson, C Xie arXiv preprint arXiv:1511.08753, 2015 | 13 | 2015 |
| Primer-free FISH probes from metagenomics/metatranscriptomics data permit the study of uncharacterised taxa in complex microbial communities SM Tan, PYM Yung, PE Hutchinson, C Xie, GH Teo, MH Ismail, ... npj Biofilms and Microbiomes 5 (1), 17, 2019 | 12 | 2019 |
| Metagenomics reveals the influence of land use and rain on the benthic microbial communities in a tropical urban waterway G Saxena, S Mitra, EM Marzinelli, C Xie, TJ Wei, PD Steinberg, ... Msystems 3 (3), 10.1128/msystems. 00136-17, 2018 | 10 | 2018 |
| Simple re-instantiation of small databases using cloud computing TW Tan, C Xie, M De Silva, KS Lim, CPK Patro, SJ Lim, KR Govindarajan, ... BMC genomics 14, 1-4, 2013 | 5 | 2013 |
