Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information S Ahmad, MM Gromiha, A Sarai Bioinformatics 20 (4), 477-486, 2004 | 414 | 2004 |
PSSM-based prediction of DNA binding sites in proteins S Ahmad, A Sarai BMC bioinformatics 6 (1), 33, 2005 | 313 | 2005 |
ASAView: database and tool for solvent accessibility representation in proteins S Ahmad, M Gromiha, H Fawareh, A Sarai BMC bioinformatics 5 (1), 51, 2004 | 303 | 2004 |
Real value prediction of solvent accessibility from amino acid sequence S Ahmad, MM Gromiha, A Sarai Proteins: Structure, Function, and Bioinformatics 50 (4), 629-635, 2003 | 235 | 2003 |
Moments-based Prediction of DNA-binding Proteins S Ahmad, A Sarai Journal of Molecular Biology 341 (1), 65-71, 2004 | 167 | 2004 |
Structural analysis of cation–π interactions in DNA binding proteins MM Gromiha, C Santhosh, S Ahmad International journal of biological macromolecules 34 (3), 203-211, 2004 | 135 | 2004 |
NETASA: neural network based prediction of solvent accessibility S Ahmad, MM Gromiha Bioinformatics 18 (6), 819-824, 2002 | 135 | 2002 |
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network A Malik, S Ahmad BMC Structural Biology 7 (1), 1, 2007 | 114 | 2007 |
RVP-net: online prediction of real valued accessible surface area of proteins from single sequences S Ahmad, MM Gromiha, A Sarai Bioinformatics 19 (14), 1849-1851, 2003 | 110 | 2003 |
Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins S Ahmad, O Keskin, A Sarai, R Nussinov Nucleic acids research 36 (18), 5922-5932, 2008 | 103 | 2008 |
Partner-aware prediction of interacting residues in protein-protein complexes from sequence data S Ahmad, K Mizuguchi PLoS One 6 (12), e29104, 2011 | 101 | 2011 |
Neural network‐based prediction of transmembrane β‐strand segments in outer membrane proteins MM Gromiha, S Ahmad, M Suwa Journal of computational chemistry 25 (5), 762-767, 2004 | 99 | 2004 |
Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions AP Hutchins, D Diez, Y Takahashi, S Ahmad, R Jauch, ML Tremblay, ... Nucleic acids research 41 (4), 2155-2170, 2013 | 95 | 2013 |
A comparison of shallow and deep learning methods for predicting cognitive performance of stroke patients from MRI lesion images S Chauhan, L Vig, MDFD Grazia, M Corbetta, S Ahmad*, M Zorzi* Frontiers in Neuroinformatics 2019, 2019 | 81 | 2019 |
uORFs, reinitiation and alternative translation start sites in human mRNAs AV Kochetov, S Ahmad, V Ivanisenko, OA Volkova, NA Kolchanov, ... FEBS letters 582 (9), 1293-1297, 2008 | 77 | 2008 |
Design and training of a neural network for predicting the solvent accessibility of proteins S Ahmad, MM Gromiha Journal of computational chemistry 24 (11), 1313-1320, 2003 | 77 | 2003 |
TMBETA-NET: discrimination and prediction of membrane spanning β-strands in outer membrane proteins MM Gromiha, S Ahmad, M Suwa Nucleic acids research 33 (suppl_2), W164-W167, 2005 | 74 | 2005 |
Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein− DNA Recognition MJ Araúzo-Bravo, S Fujii, H Kono, S Ahmad, A Sarai Journal of the American Chemical Society 127 (46), 16074-16089, 2005 | 65 | 2005 |
Profiles of microRNA networks in intestinal epithelial cells in a mouse model of colitis J Lee, EJ Park, Y Yuki, S Ahmad, K Mizuguchi, KJ Ishii, M Shimaoka, ... Scientific reports 5, 18174, 2015 | 61 | 2015 |
Application of residue distribution along the sequence for discriminating outer membrane proteins MM Gromiha, S Ahmad, M Suwa Computational biology and chemistry 29 (2), 135-142, 2005 | 61 | 2005 |