| HPEPDOCK: a web server for blind peptide–protein docking based on a hierarchical algorithm P Zhou, B Jin, H Li, SY Huang Nucleic acids research 46 (W1), W443-W450, 2018 | 408 | 2018 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 85 | 2021 |
| Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 21 | 2023 |
| HDOCK update for modeling protein‐RNA/DNA complex structures H Li, E Huang, Y Zhang, SY Huang, Y Xiao Protein Science 31 (11), e4441, 2022 | 11 | 2022 |
| Holo Protein Conformation Generation from Apo Structures by Ligand Binding Site Refinement J Zhang, H Li, X Zhao, Q Wu, SY Huang Journal of Chemical Information and Modeling 62 (22), 5806-5820, 2022 | 10 | 2022 |
| Protein–protein contact prediction by geometric triangle-aware protein language models P Lin, H Tao, H Li, SY Huang Nature Machine Intelligence 5 (11), 1275-1284, 2023 | 5 | 2023 |
| Protein–protein docking with interface residue restraints H Li, SY Huang Chinese Physics B 30 (1), 018703, 2021 | 5 | 2021 |
| Inclusion of desolvation energy into protein–protein docking through atomic contact potentials H Li, Y Yan, X Zhao, SY Huang Journal of Chemical Information and Modeling 62 (3), 740-750, 2022 | 4 | 2022 |
| Iterative Knowledge-Based Scoring Function for Protein–Ligand Interactions by Considering Binding Affinity Information X Zhao, H Li, K Zhang, SY Huang The Journal of Physical Chemistry B 127 (42), 9021-9034, 2023 | 1 | 2023 |
| Deep learning in modeling protein complex structures: From contact prediction to end-to-end approaches P Lin, H Li, SY Huang Current Opinion in Structural Biology 85, 102789, 2024 | | 2024 |
