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| Single-cell multi-cohort dissection of the schizophrenia transcriptome WB Ruzicka, S Mohammadi, JF Fullard, J Davila-Velderrain, S Subburaju, ... Science 384 (6698), eadg5136, 2024 | 21 | 2024 |
| Single-cell genomics and regulatory networks for 388 human brains PS Emani, JJ Liu, D Clarke, M Jensen, J Warrell, C Gupta, R Meng, ... Science 384 (6698), eadi5199, 2024 | 13 | 2024 |
| Characterizing dysregulations via cell-cell communications in Alzheimer’s brains using single-cell transcriptomes CY Lee, D Riffle, Y Xiong, N Momtaz, Y Lei, JM Pariser, D Sikdar, ... BMC neuroscience 25 (1), 24, 2024 | 4 | 2024 |
| iHerd: an integrative hierarchical graph representation learning framework to quantify network changes and prioritize risk genes in disease Z Duan, Y Dai, A Hwang, C Lee, K Xie, C Xiao, M Xu, MJ Girgenti, ... PLoS Computational Biology 19 (9), e1011444, 2023 | 2 | 2023 |
| Cortical surface electrical potentials are composed of multiple bandlimited frequency components, including high-gamma JA Livezey, A Hwang, K Usovich, ME Dougherty, EF Chang, KE Bouchard bioRxiv, 2022.07. 22.501176, 2022 | 2 | 2022 |
| Translator: A Transfer Learning Approach to Facilitate Single-Cell ATAC-Seq Data Analysis from Reference Dataset S Xu, M Skarica, A Hwang, Y Dai, C Lee, MJ Girgenti, J Zhang Journal of Computational Biology 29 (7), 619-633, 2022 | 2 | 2022 |
| InsuLock: A weakly supervised learning approach for accurate insulator prediction, and variant impact quantification SS Srinivasan, Y Gong, S Xu, A Hwang, M Xu, MJ Girgenti, J Zhang Genes 13 (4), 621, 2022 | 2 | 2022 |
| scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding Z Duan, S Xu, S Sai Srinivasan, A Hwang, CY Lee, F Yue, M Gerstein, ... Briefings in Bioinformatics 25 (2), bbae096, 2024 | 1 | 2024 |
| Hangul Fonts Dataset: A Hierarchical and Compositional Dataset for Investigating Learned Representations JA Livezey, A Hwang, J Yeung, KE Bouchard International Conference on Image Analysis and Processing, 3-14, 2022 | 1 | 2022 |
| Validation of Enhancer Regions in Primary Human Neural Progenitor Cells using Capture STARR-seq SC Gaynor-Gillett, L Cheng, M Shi, J Liu, G Wang, M Spector, M Flaherty, ... bioRxiv, 2024 | | 2024 |
| Single Cell Genomic Analysis Reveals Cell Type-Specific Molecular Signatures in the Human PTSD Prefrontal Cortex M Girgenti, J Zhang, M Skarica, A Hwang, K Xu, K Young, H Zhao, ... Biological Psychiatry 93 (9), S11-S12, 2023 | | 2023 |
