Characterizing mutational signatures in human cancer cell lines reveals episodic APOBEC mutagenesis M Petljak, LB Alexandrov, JS Brammeld, S Price, DC Wedge, ... Cell 176 (6), 1282-1294. e20, 2019 | 378 | 2019 |
Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara, EN Bergstrom, ... Cell genomics 2 (11), 2022 | 188 | 2022 |
Genomic and evolutionary classification of lung cancer in never smokers T Zhang, P Joubert, N Ansari-Pour, W Zhao, PH Hoang, R Lokanga, ... Nature genetics 53 (9), 1348-1359, 2021 | 117 | 2021 |
Integromic analysis of genetic variation and gene expression identifies networks for cardiovascular disease phenotypes C Yao, BH Chen, R Joehanes, B Otlu, X Zhang, C Liu, T Huan, O Tastan, ... Circulation 131 (6), 536-549, 2015 | 77 | 2015 |
DNA damage and somatic mutations in mammalian cells after irradiation with a nail polish dryer M Zhivagui, A Hoda, N Valenzuela, YY Yeh, J Dai, Y He, SP Nandi, B Otlu, ... Nature communications 14 (1), 276, 2023 | 24 | 2023 |
The genomic and epigenomic evolutionary history of papillary renal cell carcinomas B Zhu, ML Poeta, M Costantini, T Zhang, J Shi, S Sentinelli, W Zhao, ... Nature communications 11 (1), 3096, 2020 | 23 | 2020 |
Topography of mutational signatures in human cancer B Otlu, M Díaz-Gay, I Vermes, EN Bergstrom, M Zhivagui, M Barnes, ... Cell reports 42 (8), 2023 | 21 | 2023 |
GLANET: genomic loci annotation and enrichment tool B Otlu, C Firtina, S Keleş, O Tastan Bioinformatics 33 (18), 2818-2828, 2017 | 17 | 2017 |
Geographic variation of mutagenic exposures in kidney cancer genomes S Senkin, S Moody, M Díaz-Gay, B Abedi-Ardekani, T Cattiaux, ... Nature, 1-9, 2024 | 9 | 2024 |
Inexpensive and robust 3D model acquisition system for three-dimensional modeling of small artifacts U Yılmaz, O Özün, B Otlu, A Mülayim, V Atalay ISPRS CIPA, 2003 | 6 | 2003 |
Evaluating topography of mutational signatures with SigProfilerTopography B Otlu, LB Alexandrov bioRxiv, 2024 | 3 | 2024 |
JOA: Joint overlap analysis of multiple genomic interval sets B Otlu, T Can BMC bioinformatics 20, 1-14, 2019 | 3 | 2019 |
Consistency of projective reconstructions obtained from the same image pair B OTLU, MV ATALAY, R HASSANPOUR Recent Trends In Multimedia Information Processing, 376-381, 2002 | 3 | 2002 |
Relative consistency of projective reconstructions obtained from the same image pair B Otlu, MV Atalay, R Hassanpour International Journal of Pattern Recognition and Artificial Intelligence 20 …, 2006 | 1 | 2006 |
The mutagenic forces shaping the genomic landscape of lung cancer in never smokers M Díaz-Gay, T Zhang, PH Hoang, A Khandekar, W Zhao, CD Steele, ... medRxiv, 2024 | | 2024 |
Abstract LB231: The mutagenic forces shaping the genomic landscape of lung cancer in never smokers M Diaz-Gay, T Zhang, A Khandekar, B Otlu, S Nandi, CD Steele, ... Cancer Research 84 (7_Supplement), LB231-LB231, 2024 | | 2024 |
Prediction of Non-coding Driver Mutations Using Ensemble Learning S Basharat, R Hüseynov, HH Kılınç, B Otlu 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023 | | 2023 |
Abstract LB059: DNA damage and somatic mutations in mammalian cells after irradiation with a nail polish dryer M Zhivagui, A Hoda, N Valenzuela, Y Yeh, J Dai, Y He, SP Nandi, B Otlu, ... Cancer Research 83 (8_Supplement), LB059-LB059, 2023 | | 2023 |
15th International Symposium on Health Informatics and Bioinformatics HIBIT’22 (20-22 October 2022) Y Aydın Son, A Karahan, B Otlu Orta Doğu Teknik Üniversitesi Enformatik Enstitüsü, 2022 | | 2022 |
Supplementary Materials for ‘GLANET: Genomic Loci ANnotation and Enrichment Tool’ B Otlu, C Firtina, S Keles, O Tastan Gen 10, 00, 2017 | | 2017 |