PAML 4: phylogenetic analysis by maximum likelihood Z Yang Molecular biology and evolution 24 (8), 1586-1591, 2007 | 12606 | 2007 |
PAML: a program package for phylogenetic analysis by maximum likelihood Z Yang Computer applications in the biosciences: CABIOS 13 (5), 555-556, 1997 | 5922 | 1997 |
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods Z Yang Journal of Molecular evolution 39, 306-314, 1994 | 3152 | 1994 |
Codon-substitution models for heterogeneous selection pressure at amino acid sites Z Yang, R Nielsen, N Goldman, AMK Pedersen Genetics 155 (1), 431-449, 2000 | 2604 | 2000 |
A codon-based model of nucleotide substitution for protein-coding DNA sequences. N Goldman, Z Yang Molecular biology and evolution 11 (5), 725-736, 1994 | 2374 | 1994 |
Bayes empirical Bayes inference of amino acid sites under positive selection Z Yang, WSW Wong, R Nielsen Molecular biology and evolution 22 (4), 1107-1118, 2005 | 2319 | 2005 |
Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference B Rannala, Z Yang Journal of molecular evolution 43, 304-311, 1996 | 2100 | 1996 |
Statistical methods for detecting molecular adaptation Z Yang, JP Bielawski Trends in ecology & evolution 15 (12), 496-503, 2000 | 2005 | 2000 |
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene R Nielsen, Z Yang Genetics 148 (3), 929-936, 1998 | 1893 | 1998 |
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level J Zhang, R Nielsen, Z Yang Molecular biology and evolution 22 (12), 2472-2479, 2005 | 1831 | 2005 |
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models Z Yang, R Nielsen Molecular biology and evolution 17 (1), 32-43, 2000 | 1772 | 2000 |
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Z Yang Molecular biology and evolution 15 (5), 568-573, 1998 | 1581 | 1998 |
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo method. Z Yang, B Rannala Molecular biology and evolution 14 (7), 717-724, 1997 | 1515 | 1997 |
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages Z Yang, R Nielsen Molecular biology and evolution 19 (6), 908-917, 2002 | 1465 | 2002 |
Computational molecular evolution Z Yang OUP Oxford, 2006 | 1457 | 2006 |
Bayesian species delimitation using multilocus sequence data Z Yang, B Rannala Proceedings of the National Academy of Sciences 107 (20), 9264-9269, 2010 | 1428 | 2010 |
Among-site rate variation and its impact on phylogenetic analyses Z Yang Trends in ecology & evolution 11 (9), 367-372, 1996 | 1408 | 1996 |
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Z Yang Molecular biology and evolution 10 (6), 1396-1401, 1993 | 1265 | 1993 |
Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci B Rannala, Z Yang Genetics 164 (4), 1645-1656, 2003 | 1203 | 2003 |
Estimating the pattern of nucleotide substitution Z Yang Journal of molecular evolution 39, 105-111, 1994 | 1199 | 1994 |