| Listeria monocytogenes Sequence Types 121 and 14 Repeatedly Isolated Within One Year of Sampling in a Rabbit Meat Processing Plant: Persistence and … F Pasquali, F Palma, L Guillier, A Lucchi, A De Cesare, G Manfreda Frontiers in microbiology 9, 596, 2018 | 74 | 2018 |
| Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France F Palma, T Brauge, N Radomski, L Mallet, A Felten, MY Mistou, ... BMC genomics 21, 1-20, 2020 | 64 | 2020 |
| Insights from genome-wide approaches to identify variants associated to phenotypes at pan-genome scale: Application to L. monocytogenes' ability to grow in cold conditions L Fritsch, A Felten, F Palma, JF Mariet, N Radomski, MY Mistou, ... International Journal of Food Microbiology 291, 181-188, 2019 | 47 | 2019 |
| Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:- F Palma, G Manfreda, M Silva, A Parisi, DOR Barker, EN Taboada, ... Scientific Reports 8 (1), 15251, 2018 | 36 | 2018 |
| Exposure to Quaternary Ammonium Compounds Selects Resistance to Ciprofloxacin in Listeria monocytogenes A Guérin, A Bridier, P Le Grandois, Y Sévellec, F Palma, B Félix, ... Pathogens 10 (2), 220, 2021 | 30 | 2021 |
| Whole genome sequencing for typing and characterisation of Listeria monocytogenes isolated in a rabbit meat processing plant F Palma, F Pasquali, A Lucchi, A De Cesare, G Manfreda Italian journal of food safety 6 (3), 2017 | 29 | 2017 |
| A simple and robust statistical method to define genetic relatedness of samples related to outbreaks at the genomic scale–application to retrospective salmonella foodborne … N Radomski, S Cadel-Six, E Cherchame, A Felten, P Barbet, F Palma, ... Frontiers in microbiology 10, 2413, 2019 | 28 | 2019 |
| Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods N Munck, P Leekitcharoenphon, E Litrup, R Kaas, A Meinen, L Guillier, ... Scientific data 7 (1), 75, 2020 | 19 | 2020 |
| Application of different DNA extraction procedures, library preparation protocols and sequencing platforms: impact on sequencing results F Pasquali, I Do Valle, F Palma, D Remondini, G Manfreda, G Castellani, ... Heliyon 5 (10), 2019 | 14 | 2019 |
| Microbiological profile of chicken carcasses: A comparative analysis using shotgun metagenomic sequencing A De Cesare, F Palma, A Lucchi, F Pasquali, G Manfreda Italian journal of food safety 7 (1), 2018 | 14 | 2018 |
| A European-wide dataset to uncover adaptive traits of Listeria monocytogenes to diverse ecological niches B Félix, Y Sevellec, F Palma, PE Douarre, A Felten, N Radomski, L Mallet, ... Scientific data 9 (1), 190, 2022 | 13 | 2022 |
| In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes F Palma, I Mangone, A Janowicz, A Moura, A Chiaverini, M Torresi, ... BMC genomics 23 (1), 235, 2022 | 13 | 2022 |
| First Report on the Finding of Listeria mnocytogenes ST121 Strain in a Dolphin Brain Y Sévellec, M Torresi, B Félix, F Palma, G Centorotola, S Bilei, M Senese, ... Pathogens 9 (10), 802, 2020 | 12 | 2020 |
| Rapid identification of stable clusters in bacterial populations using the adjusted Wallace coefficient DOR Barker, JA Carriço, P Kruczkiewicz, F Palma, M Rossi, EN Taboada BioRxiv, 299347, 2018 | 10 | 2018 |
| Genomic elements located in the accessory repertoire drive the adaptation to biocides in Listeria monocytogenes strains from different ecological niches F Palma, N Radomski, A Guérin, Y Sévellec, B Félix, A Bridier, C Soumet, ... Food microbiology 106, 103757, 2022 | 8 | 2022 |
| AB_SA: Accessory genes-Based Source Attribution – tracing the source of Salmonella enterica Typhimurium environmental strains L Guillier, M Gourmelon, S Lozach, S Cadel-Six, ML Vignaud, N Munck, ... Microbial genomics 6 (7), e000366, 2020 | 8 | 2020 |
| INNUENDO whole genome and core genome MLST schemas and datasets for Salmonella enterica M Rossi, MS Da Silva, BF Ribeiro-Gonçalves, DN Silva, MP Machado, ... Zenodo [Epub ahead of print], 2018 | 8 | 2018 |
| A Galaxy-based training resource for single-cell RNA-sequencing quality control and analyses GJ Etherington, N Soranzo, S Mohammed, W Haerty, RP Davey, ... GigaScience 8 (12), giz144, 2019 | 7 | 2019 |
| Taking account of genomics in quantitative microbial risk assessment: what methods? what issues? L Guillier, F Palma, L Fritsch Current Opinion in Food Science 48, 100922, 2022 | 6 | 2022 |
| The European rabbit genome J Alföldi, F Di Palma, K Lindblad-Toh Rabbit biotechnology: rabbit genomics, Transgenesis, cloning and models, 129, 2009 | 6 | 2009 |
