Deciphering cell–cell interactions and communication from gene expression E Armingol, A Officer, O Harismendy, NE Lewis Nature Reviews Genetics 22 (2), 71–88, 2021 | 757 | 2021 |
Context-aware deconvolution of cell–cell communication with Tensor-cell2cell E Armingol, HM Baghdassarian, C Martino, A Perez-Lopez, C Aamodt, ... Nature Communications 13 (1), 1-15, 2022 | 41 | 2022 |
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity C Martino, BP Kellman, DR Sandoval, TM Clausen, CA Marotz, SJ Song, ... bioRxiv, 2020 | 35 | 2020 |
Inferring a spatial code of cell-cell interactions across a whole animal body E Armingol, A Ghaddar, CJ Joshi, H Baghdassarian, I Shamie, J Chan, ... PLOS Computational Biology 18 (11), e1010715, 2022 | 30 | 2022 |
Whole-body gene expression atlas of an adult metazoan A Ghaddar, E Armingol, C Huynh, L Gevirtzman, NE Lewis, R Waterston, ... Science Advances 9 (25), eadg0506, 2023 | 21 | 2023 |
Understanding the impact of the cofactor swapping of isocitrate dehydrogenase over the growth phenotype of Escherichia coli on acetate by using constraint-based … E Armingol, E Tobar, R Cabrera PloS one 13 (4), e0196182, 2018 | 15 | 2018 |
The diversification of methods for studying cell–cell interactions and communication E Armingol, HM Baghdassarian, NE Lewis Nature Reviews Genetics 25 (6), 381-400, 2024 | 11 | 2024 |
Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples HM Baghdassarian, D Dimitrov, E Armingol, J Saez-Rodriguez, NE Lewis Cell Reports Methods 4 (4), 100758, 2024 | 5 | 2024 |
An improved algorithm for flux variability analysis D Kenefake, E Armingol, NE Lewis, EN Pistikopoulos BMC bioinformatics 23 (1), 1-14, 2022 | 5 | 2022 |
Unraveling the coordinated dynamics of protein-and metabolite-mediated cell-cell communication E Armingol, RO Larsen, M Cequeira, H Baghdassarian, NE Lewis bioRxiv, 2022 | 4 | 2022 |
Protein structure, a genetic encoding for glycosylation B Kellman, D Sandoval, O Zaytseva, K Brock, S Baboo, D Nachmanson, ... bioRxiv, 2024.05. 15.594261, 2024 | | 2024 |
Decoding glycosylation potential from protein structure across human glycoproteins with a multi-view recurrent neural network B Kellman, J Mariethoz, Y Zhang, S Shaul, M Jeffris, D Sandoval, M Jeffris, ... bioRxiv, 2024.05. 15.594334, 2024 | | 2024 |
Deciphering Patterns of Cell–Cell Interactions and Communication in Multicellular Organizations EA Armingol Gonzalez UC San Diego, 2023 | | 2023 |
Análisis de balance de flujos del crecimiento en acetato de Escherichia Coli: efecto del cambio de especificidad por el cofactor de la Isocitrato deshidrogenasa EA Armingol Gonzalez Universisdad de Chile, 2015 | | 2015 |