EvoDesign: de novo protein design based on structural and evolutionary profiles P Mitra, D Shultis, Y Zhang Nucleic acids research 41 (W1), W273-W280, 2013 | 57 | 2013 |
An Evolution-Based Approach to De Novo Protein Design and Case Study on Mycobacterium tuberculosis P Mitra, D Shultis, JR Brender, J Czajka, D Marsh, F Gray, T Cierpicki, ... PLoS computational biology 9 (10), e1003298, 2013 | 49 | 2013 |
How many protein-protein interactions types exist in nature? L Garma, S Mukherjee, P Mitra, Y Zhang PLoS One 7 (6), e38913, 2012 | 39 | 2012 |
Combining Bayes classification and point group symmetry under Boolean framework for enhanced protein quaternary structure inference P Mitra, D Pal Structure 19 (3), 304-312, 2011 | 37 | 2011 |
Delineation of crosstalk between HSP27 and MMP-2/MMP-9: A synergistic therapeutic avenue for glioblastoma management Y Rajesh, A Banerjee, I Pal, A Biswas, S Das, KK Dey, N Kapoor, ... Biochimica et Biophysica Acta (BBA)-General Subjects 1863 (7), 1196-1209, 2019 | 34 | 2019 |
New measures for estimating surface complementarity and packing at protein–protein interfaces P Mitra, D Pal FEBS letters 584 (6), 1163-1168, 2010 | 31 | 2010 |
ETV6 gene aberrations in non-haematological malignancies: A review highlighting ETV6 associated fusion genes in solid tumors A Biswas, Y Rajesh, P Mitra, M Mandal Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1874 (1), 188389, 2020 | 22 | 2020 |
Changing the apoptosis pathway through evolutionary protein design D Shultis, P Mitra, X Huang, J Johnson, NA Khattak, F Gray, C Piper, ... Journal of molecular biology 431 (4), 825-841, 2019 | 18 | 2019 |
PRUNE and PROBE—two modular web services for protein–protein docking P Mitra, D Pal Nucleic acids research 39 (suppl_2), W229-W234, 2011 | 18 | 2011 |
Using correlated parameters for improved ranking of protein–protein docking decoys P Mitra, D Pal Journal of computational chemistry 32 (5), 787-796, 2011 | 17 | 2011 |
Estimating the effect of single-point mutations on protein thermodynamic stability and analyzing the mutation landscape of the p53 protein A Banerjee, P Mitra Journal of chemical information and modeling 60 (6), 3315-3323, 2020 | 16 | 2020 |
Boosting phosphorylation site prediction with sequence feature‐based machine learning S Maiti, A Hassan, P Mitra Proteins: Structure, Function, and Bioinformatics 88 (2), 284-291, 2020 | 14 | 2020 |
Analyzing change in protein stability associated with single point deletions in a newly defined protein structure database A Banerjee, Y Levy, P Mitra Journal of proteome research 18 (3), 1402-1410, 2019 | 12 | 2019 |
Ebola virus VP35 protein: modeling of the tetrameric structure and an analysis of its interaction with human PKR A Banerjee, P Mitra Journal of Proteome Research 19 (11), 4533-4542, 2020 | 9 | 2020 |
Ebolavirus interferon antagonists—protein interaction perspectives to combat pathogenesis A Banerjee, A Pal, D Pal, P Mitra Briefings in Functional Genomics 17 (6), 392-401, 2018 | 9 | 2018 |
A graph theoretic approach to minimize total wire length in channel routing P Mitra, N Ghoshal, RK Pal TENCON 2003. Conference on Convergent Technologies for Asia-Pacific Region 1 …, 2003 | 9 | 2003 |
Genome surveillance of SARS-CoV-2 variants and their role in pathogenesis focusing on second wave of COVID-19 in India P Sarkar, S Banerjee, SA Saha, P Mitra, S Sarkar Scientific Reports 13 (1), 4692, 2023 | 7 | 2023 |
Estimating change in foldability due to multipoint deletions in protein structures A Banerjee, A Kumar, KK Ghosh, P Mitra Journal of Chemical Information and Modeling 60 (12), 6679-6690, 2020 | 7 | 2020 |
An evolutionary profile guided greedy parallel replica-exchange Monte Carlo search algorithm for rapid convergence in protein design A Banerjee, K Pal, P Mitra IEEE/ACM Transactions on Computational Biology and Bioinformatics 18 (2 …, 2019 | 7 | 2019 |
High-performance whole-cell simulation exploiting modular cell biology principles B Das, P Mitra Journal of Chemical Information and Modeling 61 (3), 1481-1492, 2021 | 6 | 2021 |