| CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences Y Lin, TJ Cradick, MT Brown, H Deshmukh, P Ranjan, N Sarode, BM Wile, ... Nucleic acids research 42 (11), 7473-7485, 2014 | 742 | 2014 |
| SAR11 bacteria linked to ocean anoxia and nitrogen loss D Tsementzi, J Wu, S Deutsch, S Nath, LM Rodriguez-R, AS Burns, ... Nature 536 (7615), 179-183, 2016 | 158 | 2016 |
| Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones JB Glass, CB Kretz, S Ganesh, P Ranjan, SL Seston, KN Buck, ... Frontiers in Microbiology 6, 998, 2015 | 57 | 2015 |
| SquiggleNet: real-time, direct classification of nanopore signals Y Bao, J Wadden, JR Erb-Downward, P Ranjan, W Zhou, TL McDonald, ... Genome biology 22, 1-16, 2021 | 50 | 2021 |
| The binding modes and binding affinities of artemisinin derivatives with Plasmodium falciparum Ca2+-ATPase (PfATP6) PK Naik, M Srivastava, P Bajaj, S Jain, A Dubey, P Ranjan, R Kumar, ... Journal of molecular modeling 17, 333-357, 2011 | 42 | 2011 |
| Rapid real-time squiggle classification for read until using rawmap H Sadasivan, J Wadden, K Goliya, P Ranjan, RP Dickson, D Blaauw, ... Archives of clinical and biomedical research 7 (1), 45, 2023 | 32 | 2023 |
| Microbial metabolism and adaptations in Atribacteria‐dominated methane hydrate sediments JB Glass, P Ranjan, CB Kretz, BL Nunn, AM Johnson, M Xu, J McManus, ... Environmental Microbiology 23 (8), 4646-4660, 2021 | 30* | 2021 |
| Gut Microbiota Predict Enterococcus Expansion but Not Vancomycin-Resistant Enterococcus Acquisition R Chanderraj, CA Brown, K Hinkle, N Falkowski, P Ranjan, RP Dickson, ... Msphere 5 (6), 10.1128/msphere. 00537-20, 2020 | 12 | 2020 |
| Metagenomics to identify pathogens in diabetic foot ulcers and the potential impact for clinical care BM Schmidt, J Erb-Downward, P Ranjan, R Dickson Current Diabetes Reports 21 (8), 26, 2021 | 10 | 2021 |
| Metatranscriptional response of chemoautotrophic Ifremeria nautilei endosymbionts to differing sulfur regimes SL Seston, RA Beinart, N Sarode, AC Shockey, P Ranjan, PR Girguis, ... Frontiers in Microbiology 7, 205900, 2016 | 9 | 2016 |
| Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing N Wu, P Ranjan, C Tao, C Liu, E Yang, B He, JR Erb-Downward, S Bo, ... Respiratory Research 22, 1-14, 2021 | 8 | 2021 |
| Commensal Oral Microbiota, Disease Severity, and Mortality in Fibrotic Lung Disease DN O’Dwyer, JS Kim, SF Ma, P Ranjan, P Das, JH Lipinski, JD Metcalf, ... American Journal of Respiratory and Critical Care Medicine 209 (9), 1101-1110, 2024 | 7 | 2024 |
| MetalloPred: A tool for hierarchical prediction of metal ion binding proteins using cluster of neural networks and sequence derived features PK Naik, P Ranjan, P Kesari, S Jain Journal of Biophysical Chemistry 2 (02), 112, 2011 | 7 | 2011 |
| SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data P Ranjan, CA Brown, JR Erb-Downward, RP Dickson Bioinformatics 38 (15), 3830-3832, 2022 | 4 | 2022 |
| Horizontal transmission of gut microbiota attenuates mortality in lung fibrosis SJ Gurczynski, JH Lipinski, J Strauss, S Alam, GB Huffnagle, P Ranjan, ... JCI insight 9 (1), 2024 | 3 | 2024 |
| High-quality genome reconstruction of Candida albicans CHN1 using nanopore and illumina sequencing and hybrid assembly S Garg, P Ranjan, JR Erb-Downward, GB Huffnagle Microbiology Resource Announcements 10 (23), 10.1128/mra. 00299-21, 2021 | 3 | 2021 |
| TpPred: A Tool for Hierarchical Prediction of Transport Proteins Using Cluster of Neural Networks and Sequence Derived Features S Jain, P Ranjan, D Sengupta, PK Naik International Journal for Computational Biology (IJCB) 1 (1), 28-36, 2014 | 3 | 2014 |
| The Lung Microbiome JH Lipinksi, P Ranjan, RP Dickson, DN O’Dwyer The Journal of Immunology 212 (8), 1269-1275, 2024 | 1 | 2024 |
| Buccal microbiome and survival in idiopathic pulmonary fibrosis: CleanUP-IPF J Kim, P Das, SF Ma, P Ranjan, Y Huang, K Anstrom, D O'Dwyer, ... European Respiratory Journal 62 (suppl 67), 2023 | 1 | 2023 |
| Red Blood Cell DNA Capture and Delivery Drives Host Responses During Polymicrobial Sepsis LK Lam, N Klingensmith, L Sayegh, E Oatman, J Jose, C Cosgriff, ... Research Square, 2024 | | 2024 |
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