| Amber 2021 DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ... University of California, San Francisco, 2021 | 5776 | 2021 |
| Observing the overall rocking motion of a protein in a crystal P Ma, Y Xue, N Coquelle, JD Haller, T Yuwen, I Ayala, O Mikhailovskii, ... Nature communications 6 (1), 8361, 2015 | 77 | 2015 |
| AMBER 22 reference manual DA Case, RE Duke, RC Walker, NR Skrynnikov, TE Cheatham III, ... University of California, San Francisco, United States-California, 2022 | 46 | 2022 |
| Modeling a unit cell: crystallographic refinement procedure using the biomolecular MD simulation platform Amber O Mikhailovskii, Y Xue, NR Skrynnikov IUCrJ 9 (1), 114-133, 2022 | 6 | 2022 |
| Insights into ubiquitin product release in hydrolysis catalyzed by the bacterial deubiquitinase SdeA MJ Sheedlo, S Kenny, IS Podkorytov, K Brown, J Ma, S Iyer, CS Hewitt, ... Biochemistry 60 (8), 584-596, 2021 | 5 | 2021 |
| X-ray crystallography module in MD simulation program amber 2023. Refining the models of protein crystals O Mikhailovskii, SA Izmailov, Y Xue, DA Case, NR Skrynnikov Journal of Chemical Information and Modeling 64 (1), 18-25, 2023 | 4 | 2023 |
| Simulating diffraction photographs based on molecular dynamics trajectories of a protein crystal: a new option to examine structure-solving strategies in protein crystallography N Liu, O Mikhailovskii, NR Skrynnikov, Y Xue IUCrJ 10 (1), 16-26, 2023 | 3 | 2023 |
| Crystallographic Module in Amber 2023 O Mikhailovskii, S Izmailov, Y Xue, D Case, N Skrynnikov PROTEIN SCIENCE 32 (12), 2023 | | 2023 |
| Applications of Molecular Dynamics Simulations in Protein X-Ray Crystallography O Mikhailovskii Purdue University, 2020 | | 2020 |
| MD-assisted refinement of x-ray coordinates O Mikhailovskii, Y Xue, NR Skrynnikov Foundations of Crystallography, 2019 | | 2019 |
| Dynamics in protein crystals: insights from MD simulations complement new solid-state NMR and X-ray data ON Rogacheva, SA Izmailov, V Kurauskas, A Shilova, P Ma, Y Xue, ... FEBS JOURNAL 283, 237-237, 2016 | | 2016 |
