| Gut microbiota profiling of pediatric nonalcoholic fatty liver disease and obese patients unveiled by an integrated meta‐omics‐based approach F Del Chierico, V Nobili, P Vernocchi, A Russo, C De Stefanis, D Gnani, ... Hepatology 65 (2), 451-464, 2017 | 640 | 2017 |
| MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis V Licursi, F Conte, G Fiscon, P Paci BMC bioinformatics 20, 1-10, 2019 | 285 | 2019 |
| Protein contact networks: an emerging paradigm in chemistry L Di Paola, M De Ruvo, P Paci, D Santoni, A Giuliani Chemical reviews 113 (3), 1598-1613, 2013 | 282 | 2013 |
| Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer P Paci, T Colombo, L Farina BMC systems biology 8, 1-15, 2014 | 252 | 2014 |
| PVT1: a rising star among oncogenic long noncoding RNAs T Colombo, L Farina, G Macino, P Paci BioMed research international 2015 (1), 304208, 2015 | 242 | 2015 |
| The oncogenic role of circPVT1 in head and neck squamous cell carcinoma is mediated through the mutant p53/YAP/TEAD transcription-competent complex L Verduci, M Ferraiuolo, A Sacconi, F Ganci, J Vitale, T Colombo, P Paci, ... Genome biology 18, 1-24, 2017 | 214 | 2017 |
| Molecular networks in Network Medicine: Development and applications EK Silverman, HHHW Schmidt, E Anastasiadou, L Altucci, M Angelini, ... Wiley Interdisciplinary Reviews: Systems Biology and Medicine 12 (6), e1489, 2020 | 172 | 2020 |
| Phylogenetic and metabolic tracking of gut microbiota during perinatal development F Del Chierico, P Vernocchi, A Petrucca, P Paci, S Fuentes, G Pratico, ... PloS one 10 (9), e0137347, 2015 | 136 | 2015 |
| Integrated network analysis identifies fight-club nodes as a class of hubs encompassing key putative switch genes that induce major transcriptome reprogramming during grapevine … MC Palumbo, S Zenoni, M Fasoli, M Massonnet, L Farina, F Castiglione, ... The Plant Cell 26 (12), 4617-4635, 2014 | 124 | 2014 |
| Ripening transcriptomic program in red and white grapevine varieties correlates with berry skin anthocyanin accumulation M Massonnet, M Fasoli, GB Tornielli, M Altieri, M Sandri, P Zuccolotto, ... Plant Physiology 174 (4), 2376-2396, 2017 | 111 | 2017 |
| Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer F Conte, G Fiscon, M Chiara, T Colombo, L Farina, P Paci PloS one 12 (2), e0171661, 2017 | 108 | 2017 |
| Gut microbiota signatures in cystic fibrosis: Loss of host CFTR function drives the microbiota enterophenotype P Vernocchi, F Del Chierico, A Russo, F Majo, M Rossitto, M Valerio, ... PloS one 13 (12), e0208171, 2018 | 104 | 2018 |
| Network analysis of gut microbiome and metabolome to discover microbiota-linked biomarkers in patients affected by non-small cell lung cancer P Vernocchi, T Gili, F Conte, F Del Chierico, G Conta, A Miccheli, ... International Journal of Molecular Sciences 21 (22), 8730, 2020 | 97 | 2020 |
| Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery P Paci, G Fiscon, F Conte, RS Wang, L Farina, J Loscalzo NPJ systems biology and applications 7 (1), 3, 2021 | 83 | 2021 |
| SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19 G Fiscon, F Conte, L Farina, P Paci PLoS computational biology 17 (2), e1008686, 2021 | 82 | 2021 |
| miR-96-5p targets PTEN expression affecting radio-chemosensitivity of HNSCC cells M Vahabi, C Pulito, A Sacconi, S Donzelli, M D’Andrea, V Manciocco, ... Journal of Experimental & Clinical Cancer Research 38, 1-16, 2019 | 78 | 2019 |
| Network-based approaches to explore complex biological systems towards network medicine G Fiscon, F Conte, L Farina, P Paci Genes 9 (9), 437, 2018 | 75 | 2018 |
| A paradigm shift in medicine: A comprehensive review of network-based approaches F Conte, G Fiscon, V Licursi, D Bizzarri, T D'Antò, L Farina, P Paci Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (6), 194416, 2020 | 73 | 2020 |
| Modeling lymphocyte homing and encounters in lymph nodes V Baldazzi, P Paci, M Bernaschi, F Castiglione BMC bioinformatics 10, 1-11, 2009 | 72 | 2009 |
| SWIM: a computational tool to unveiling crucial nodes in complex biological networks P Paci, T Colombo, G Fiscon, A Gurtner, G Pavesi, L Farina Scientific reports 7 (1), 44797, 2017 | 68 | 2017 |
