NPDock: a web server for protein-nucleic acid docking I Tuszynska, M Magnus, K Jonak, W Dawson, JM Bujnicki Nucleic Acids Res., 2015 | 221 | 2015 |
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 185 | 2017 |
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015 | 182 | 2015 |
SimRNAweb: a web server for RNA 3D structure modeling with optional restraints M Magnus, MJ Boniecki, W Dawson, JM Bujnicki Nucleic acids research 44 (W1), W315-W319, 2016 | 137 | 2016 |
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020 | 114 | 2020 |
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020 | 66 | 2020 |
Structural bioinformatics of the human spliceosomal proteome I Korneta, M Magnus, JM Bujnicki Nucleic acids research 40 (15), 7046-7065, 2012 | 55 | 2012 |
Computational modeling of RNA 3D structures, with the aid of experimental restraints M Magnus, D Matelska, G Łach, G Chojnowski, MJ Boniecki, E Purta, ... RNA biology 11 (5), 522-536, 2014 | 48 | 2014 |
MetaLocGramN: A meta-predictor of protein subcellular localization for Gram-negative bacteria M Magnus, M Pawlowski, JM Bujnicki Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1824 (12), 1425-1433, 2012 | 39 | 2012 |
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information P Boccaletto, M Magnus, C Almeida, A Żyła, A Astha, R Pluta, B Bagiński, ... Nucleic acids research 46 (D1), D202-D205, 2017 | 31 | 2017 |
RNA 3D structure prediction guided by independent folding of homologous sequences M Magnus, K Kappel, R Das, JM Bujnicki BMC bioinformatics 20, 1-15, 2019 | 30 | 2019 |
Computational modeling of protein–RNA complex structures I Tuszynska, D Matelska, M Magnus, G Chojnowski, JM Kasprzak, ... Methods 65 (3), 310-319, 2014 | 30 | 2014 |
Structures of microRNA precursors P Kozlowski, J Starega-Roslan, M Legacz, M Magnus, WJ Krzyzosiak Current perspectives in microRNAs (miRNA), 1-16, 2008 | 30* | 2008 |
Rearrangements within the U6 snRNA core during the transition between the two catalytic steps of splicing K Eysmont, K Matylla-Kulińska, A Jaskulska, M Magnus, MM Konarska Molecular cell 75 (3), 538-548. e3, 2019 | 16 | 2019 |
RNA 3D structure modeling by combination of template-based method ModeRNA, template-free folding with SimRNA, and refinement with QRNAS P Piatkowski, JM Kasprzak, D Kumar, M Magnus, G Chojnowski, ... RNA Structure Determination: Methods and Protocols, 217-235, 2016 | 15 | 2016 |
Modeling of protein–RNA complex structures using computational docking methods B Madan, JM Kasprzak, I Tuszynska, M Magnus, K Szczepaniak, ... Computational Design of Ligand Binding Proteins, 353-372, 2016 | 9 | 2016 |
RNA 3D structure modeling by fragment assembly with small-angle X-ray scattering restraints G Chojnowski, R Zaborowski, M Magnus, S Mukherjee, JM Bujnicki Bioinformatics 39 (9), btad527, 2023 | 7* | 2023 |
rna-tools.online: a Swiss army knife for RNA 3D structure modeling workflow M Magnus Nucleic Acids Research, 2022 | 4 | 2022 |
RNA3DB: A structurally-dissimilar dataset split for training and benchmarking deep learning models for RNA structure prediction M Szikszai, M Magnus, S Sanghi, S Kadyan, N Bouatta, E Rivas Journal of Molecular Biology, 168552, 2024 | 1 | 2024 |
RNA 3D structure comparison using RNA-Puzzles toolkit M Magnus, Z Miao RNA Structure Prediction, 263-285, 2023 | 1 | 2023 |