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Siddharth M Chauhan
Siddharth M Chauhan
PhD Candidate, UC San Diego
在 ucsd.edu 的电子邮件经过验证
标题
引用次数
引用次数
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MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
445*2020
Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks
AV Sastry, S Poudel, K Rychel, R Yoo, CR Lamoureux, S Chauhan, ...
BioRxiv, 2021.07. 01.450581, 2021
342021
Machine learning of all Mycobacterium tuberculosis H37Rv RNA-seq data reveals a structured interplay between metabolism, stress response, and infection
R Yoo, K Rychel, S Poudel, T Al-Bulushi, Y Yuan, S Chauhan, ...
MSphere 7 (2), e00033-22, 2022
292022
Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius
SM Chauhan, S Poudel, K Rychel, C Lamoureux, R Yoo, T Al Bulushi, ...
Frontiers in Microbiology 12, 753521, 2021
222021
Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa
A Rajput, H Tsunemoto, AV Sastry, R Szubin, K Rychel, SM Chauhan, ...
Nucleic acids research 50 (17), 9675-9688, 2022
192022
Pangenome analysis reveals the genetic basis for taxonomic classification of the Lactobacillaceae family
A Rajput, SM Chauhan, OS Mohite, JC Hyun, O Ardalani, LJ Jahn, ...
Food microbiology 115, 104334, 2023
172023
Pan-genome analysis of transcriptional regulation in six Salmonella enterica serovar typhimurium strains reveals their different regulatory structures
Y Yuan, Y Seif, K Rychel, R Yoo, S Chauhan, S Poudel, T Al-Bulushi, ...
Msystems 7 (6), e00467-22, 2022
92022
proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms
KT Decker, Y Gao, K Rychel, T Al Bulushi, SM Chauhan, D Kim, BK Cho, ...
Nucleic acids research 50 (D1), D1077-D1084, 2022
82022
Machine learning of all Mycobacterium tuberculosis H37Rv RNA-seq data reveals a structured interplay between metabolism, stress response, and infection. MSphere. 2022; 7 (2 …
R Yoo, K Rychel, S Poudel, T Al-Bulushi, Y Yuan, S Chauhan
DOI 10, 00033-22, 0
6
Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks. bioRxiv 2021.07. 01.450581
AV Sastry, S Poudel, K Rychel, R Yoo, CR Lamoureux, S Chauhan, ...
52021
Pan-genomic analysis of transcriptional modules across Salmonella Typhimurium reveals the regulatory landscape of different strains
Y Yuan, Y Seif, K Rychel, R Yoo, S Chauhan, S Poudel, T Al-bulushi, ...
bioRxiv, 2022.01. 11.475931, 2022
42022
Using the E. coli Alleleome in Strain Design
P Phaneuf, ZD Jarczynska, V Kandasamy, S Chauhan, AM Feist, ...
bioRxiv, 2023.09. 17.558058, 2023
22023
The Pangenome of Escherichia coli
SM Chauhan, O Ardalani, JC Hyun, PV Phaneuf, JM Monk, BO Palsson
bioRxiv, 2024.06. 07.598014, 2024
12024
Genomic insights into Lactobacillaceae: Analyzing the “Alleleome” of core pangenomes for enhanced understanding of strain diversity and revealing Phylogroup …
AS Harke, J Josephs-Spauling, OS Mohite, SM Chauhan, O Ardalani, ...
bioRxiv, 2023.09. 22.558971, 2023
12023
Representation of Prepositions in ESL Textbooks of Lower Primary Classes: A Study of NCERT Textbooks in India
S Chauhan, S Ghosh
International Journal of Linguistics, Literature and Translation 7 (10), 75-84, 2024
2024
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