Full-length transcriptome assembly from RNA-Seq data without a reference genome MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ... Nature biotechnology 29 (7), 644-652, 2011 | 19432* | 2011 |
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs M Guttman, M Garber, JZ Levin, J Donaghey, J Robinson, X Adiconis, ... Nature biotechnology 28 (5), 503-510, 2010 | 1482 | 2010 |
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells AK Shalek, R Satija, X Adiconis, RS Gertner, JT Gaublomme, ... Nature 498 (7453), 236-240, 2013 | 1362 | 2013 |
Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics K Shekhar, SW Lapan, IE Whitney, NM Tran, EZ Macosko, M Kowalczyk, ... Cell 166 (5), 1308-1323. e30, 2016 | 1130 | 2016 |
RNA-SeQC: RNA-seq metrics for quality control and process optimization DS DeLuca, JZ Levin, A Sivachenko, T Fennell, MD Nazaire, C Williams, ... Bioinformatics 28 (11), 1530-1532, 2012 | 925 | 2012 |
Comprehensive comparative analysis of strand-specific RNA sequencing methods JZ Levin, M Yassour, X Adiconis, C Nusbaum, DA Thompson, N Friedman, ... Nature methods 7 (9), 709-715, 2010 | 910 | 2010 |
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis A Pauli, E Valen, MF Lin, M Garber, NL Vastenhouw, JZ Levin, L Fan, ... Genome Research 22 (3), 577-591, 2012 | 839 | 2012 |
Individual brain organoids reproducibly form cell diversity of the human cerebral cortex S Velasco, AJ Kedaigle, SK Simmons, A Nash, M Rocha, G Quadrato, ... Nature 570 (7762), 523-527, 2019 | 795 | 2019 |
The African coelacanth genome provides insights into tetrapod evolution CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ... Nature 496 (7445), 311-316, 2013 | 753 | 2013 |
Peptidomic discovery of short open reading frame–encoded peptides in human cells SA Slavoff, AJ Mitchell, AG Schwaid, MN Cabili, J Ma, JZ Levin, ... Nature chemical biology 9 (1), 59-64, 2013 | 670 | 2013 |
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods J Ding, X Adiconis, SK Simmons, MS Kowalczyk, CC Hession, ... Nature biotechnology 38 (6), 737-746, 2020 | 663 | 2020 |
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells M Rabani, JZ Levin, L Fan, X Adiconis, R Raychowdhury, M Garber, ... Nature biotechnology 29 (5), 436-442, 2011 | 649 | 2011 |
The SHOOT MERISTEMLESS gene is required for maintenance of undifferentiated cells in Arabidopsis shoot and floral meristems and acts at a different regulatory level than the … K Endrizzi, B Moussian, A Haecker, JZ Levin, T Laux The Plant Journal 10 (6), 967-979, 1996 | 576 | 1996 |
Comparative functional genomics of the fission yeasts N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ... Science 332 (6032), 930-936, 2011 | 542 | 2011 |
Single-cell transcriptomic profiling of the aging mouse brain M Ximerakis, SL Lipnick, BT Innes, SK Simmons, X Adiconis, D Dionne, ... Nature neuroscience 22 (10), 1696-1708, 2019 | 534 | 2019 |
The CLAVATA and SHOOT MERISTEMLESS loci competitively regulate meristem activity in Arabidopsis SE Clark, SE Jacobsen, JZ Levin, EM Meyerowitz Development 122 (5), 1567-1575, 1996 | 525 | 1996 |
Comparative analysis of RNA sequencing methods for degraded or low-input samples X Adiconis, D Borges-Rivera, R Satija, DS DeLuca, MA Busby, AM Berlin, ... Nature methods 10 (7), 623-629, 2013 | 518 | 2013 |
Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes NM Tran, K Shekhar, IE Whitney, A Jacobi, I Benhar, G Hong, W Yan, ... Neuron 104 (6), 1039-1055. e12, 2019 | 474 | 2019 |
Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana J McElver, I Tzafrir, G Aux, R Rogers, C Ashby, K Smith, C Thomas, ... Genetics 159 (4), 1751-1763, 2001 | 398 | 2001 |
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection MR Henn, CL Boutwell, P Charlebois, NJ Lennon, KA Power, ... PLoS pathogens 8 (3), e1002529, 2012 | 396 | 2012 |