Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots JM Alvarez, E Riveras, EA Vidal, DE Gras, O Contreras‐López, ... The Plant Journal 80 (1), 1-13, 2014 | 294 | 2014 |
Nitrate in 2020: thirty years from transport to signaling networks EA Vidal, JM Alvarez, V Araus, E Riveras, MD Brooks, G Krouk, S Ruffel, ... The Plant Cell 32 (7), 2094-2119, 2020 | 243 | 2020 |
The calcium ion is a second messenger in the nitrate signaling pathway of Arabidopsis E Riveras, JM Alvarez, EA Vidal, C Oses, A Vega, RA Gutiérrez Plant physiology 169 (2), 1397-1404, 2015 | 227 | 2015 |
Integration of local and systemic signaling pathways for plant N responses JM Alvarez, EA Vidal, RA Gutiérrez Current opinion in plant biology 15 (2), 185-191, 2012 | 175 | 2012 |
Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions MD Brooks, J Cirrone, AV Pasquino, JM Alvarez, J Swift, S Mittal, ... Nature communications 10 (1), 1569, 2019 | 138 | 2019 |
Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana RAG J Canales, O Contreras-López,JM Álvarez The Plant Journal, 2017 | 126 | 2017 |
Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade JM Alvarez, AL Schinke, MD Brooks, A Pasquino, L Leonelli, K Varala, ... Nature communications 11 (1), 1157, 2020 | 113 | 2020 |
Transcriptional networks in the nitrate response of Arabidopsis thaliana EA Vidal, JM Alvarez, TC Moyano, RA Gutiérrez Current opinion in plant biology 27, 125-132, 2015 | 94 | 2015 |
Nitrate signaling and early responses in Arabidopsis roots GRA Undurraga SF, Ibarra-Henríquez C, Fredes I, Alvarez JM Journal of Experimental Botany, 2017 | 87 | 2017 |
Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1. 1 nitrate transport function EA Vidal, JM Alvarez, RA Gutiérrez Plant signaling & behavior 9 (6), e28501, 2014 | 83 | 2014 |
Mapping transcription factor interactome networks using HaloTag protein arrays J Yazaki, M Galli, AY Kim, K Nito, F Aleman, KN Chang, AR Carvunis, ... Proceedings of the National Academy of Sciences 113 (29), E4238-E4247, 2016 | 81 | 2016 |
Expression of genes encoding laccase and manganese-dependent peroxidase in the fungus Ceriporiopsis subvermispora is mediated by an ACE1-like copper-fist transcription factor JM Alvarez, P Canessa, RA Mancilla, R Polanco, PA Santibáñez, ... Fungal Genetics and Biology 46 (1), 104-111, 2009 | 75 | 2009 |
A balancing act: how plants integrate nitrogen and water signals V Araus, J Swift, JM Alvarez, A Henry, GM Coruzzi Journal of Experimental Botany 71 (15), 4442-4451, 2020 | 68 | 2020 |
Nutrient dose-responsive transcriptome changes driven by Michaelis–Menten kinetics underlie plant growth rates GMC J Swift, JM Alvarez, V Araus, RA Gutiérrez Proceeding of the National Academy of Sciences USA, 2020 | 45 | 2020 |
ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks MD Brooks, CL Juang, MS Katari, JM Alvarez, A Pasquino, HJ Shih, ... Plant physiology 185 (1), 49-66, 2021 | 37 | 2021 |
Local Changes in Chromatin Accessibility and Transcriptional Networks Underlying the Nitrate Response in Arabidopsis Roots JM Alvarez, TC Moyano, T Zhang, DE Gras, V Herrera, FJ, Araus, ... Molecular Plant 12 (12), 1545-1560, 2019 | 35 | 2019 |
The copper-dependent ACE1 transcription factor activates the transcription of the mco1 gene from the basidiomycete Phanerochaete chrysosporium JM Alvarez, P Canessa, R Polanco, P Bull, R Vicuna Microbiology 154 (2), 491-499, 2008 | 27 | 2008 |
Time-based systems biology approaches to capture and model dynamic gene regulatory networks JM Alvarez, MD Brooks, J Swift, GM Coruzzi Annual Review of Plant Biology 72 (1), 105-131, 2021 | 22 | 2021 |
Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate O Contreras-López, EA Vidal, E Riveras, JM Alvarez, TC Moyano, ... Proceedings of the National Academy of Sciences 119 (4), e2107879119, 2022 | 20 | 2022 |
Cell surface receptor kinase FERONIA linked to nutrient sensor TORC signaling controls root hair growth at low temperature linked to low nitrate in Arabidopsis thaliana New Phytologist, 2023 | 16 | 2023 |