Microbial nitrogen cycling in estuaries: From genes to ecosystem processes J Damashek, CA Francis Estuaries and Coasts 41 (3), 626-660, 2018 | 136 | 2018 |
Variable nitrification rates across environmental gradients in turbid, nutrient-rich estuary waters of San Francisco Bay J Damashek, KL Casciotti, CA Francis Estuaries and Coasts 39 (4), 1050-1071, 2016 | 82 | 2016 |
Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia‐oxidizing microorganisms in the dark northeast Pacific Ocean JM Smith, J Damashek, FP Chavez, CA Francis Limnology and Oceanography 61 (2), 596-609, 2016 | 75 | 2016 |
Benthic ammonia oxidizers differ in community structure and biogeochemical potential across a riverine delta J Damashek, JM Smith, AC Mosier, CA Francis Frontiers in Microbiology 5, 743, 2015 | 42 | 2015 |
Out of America to Africa or Asia: Inference of dispersal histories using nuclear and plastid DNA and the S-RNase self-incompatibility locus JS Miller, A Kamath, J Damashek, RA Levin Molecular Biology and Evolution 28 (1), 793-801, 2011 | 35 | 2011 |
Non-point source fecal contamination from aging wastewater infrastructure is a primary driver of antibiotic resistance in surface waters J Damashek, JR Westrich, JMB McDonald, ME Teachey, CR Jackson, ... Water Research 222, 118853, 2022 | 27 | 2022 |
Microbial oxidation of nitrogen supplied as selected organic nitrogen compounds in the South Atlantic Bight J Damashek, BB Tolar, Q Liu, AO Okotie‐Oyekan, NJ Wallsgrove, ... Limnology and Oceanography 64 (3), 982-995, 2019 | 26 | 2019 |
Indigenous arsenic (V)‐reducing microbial communities in redox‐fluctuating near‐surface sediments of the Mekong Delta SC Ying, J Damashek, S Fendorf, CA Francis Geobiology 13 (6), 581-587, 2015 | 22 | 2015 |
In-depth spatiotemporal characterization of planktonic archaeal and bacterial communities in North and South San Francisco Bay AN Rasmussen, J Damashek, EA Eloe-Fadrosh, CA Francis Microbial Ecology 81 (3), 601-616, 2021 | 15 | 2021 |
Regional patterns in ammonia-oxidizing communities throughout Chukchi Sea waters from the Bering Strait to the Beaufort Sea J Damashek, KP Pettie, ZW Brown, MM Mills, KR Arrigo, CA Francis Aquatic Microbial Ecology 79 (3), 273-286, 2017 | 11 | 2017 |
Coastal ocean metagenomes and curated metagenome-assembled genomes from Marsh Landing, Sapelo Island (Georgia, USA) J Damashek, CF Edwardson, BB Tolar, SM Gifford, MA Moran, ... Microbiology Resource Announcements 8 (40), e00934-19, 2019 | 7 | 2019 |
Transcriptional activity differentiates families of Marine Group II Euryarchaeota in the coastal ocean J Damashek, AO Okotie-Oyekan, SM Gifford, A Vorobev, MA Moran, ... ISME Communications 1, 5, 2021 | 6 | 2021 |
Limited accessibility of nitrogen supplied as amino acids, amides, and amines as energy sources for marine Thaumarchaeota J Damashek, B Bayer, GJ Herndl, NJ Wallsgrove, T Allen, BN Popp, ... bioRxiv, 2021.07. 22.453390, 2021 | 5 | 2021 |
Distribution of antibiotic resistance in a mixed-use watershed and the impact of wastewater treatment plants on antibiotic resistance in surface water S Cho, LM Hiott, QD Read, J Damashek, J Westrich, M Edwards, RF Seim, ... Antibiotics 12 (11), 1586, 2023 | 3 | 2023 |
Nitrification in a nutrient-rich urban estuary: regional and temporal variations in the microbial ecology and biogeochemical activity of ammonia oxidizers in San Francisco Bay J Damashek Stanford University, 2016 | 1 | 2016 |
Contribution of urea to nitrite production in Southern Ocean waters with contrasting nitrifying communities JT Hollibaugh, A Okotie-Oyekan, J Damashek, H Ducklow, B Popp, ... bioRxiv, 2024.02. 20.581251, 2024 | | 2024 |
Substrate pulses as a selection factor for clades of marine Thaumarchaeota J Hollibaugh, J Damashek, H Ducklow, B Popp, N Wallsgrove | | 2023 |