| The SIRAH 2.0 force field: altius, fortius, citius MR Machado, EE Barrera, F Klein, M Sóñora, S Silva, S Pantano Journal of chemical theory and computation 15 (4), 2719-2733, 2019 | 134 | 2019 |
| Pandemic influenza A virus codon usage revisited: biases, adaptation and implications for vaccine strain development N Goñi, A Iriarte, V Comas, M Soñora, P Moreno, G Moratorio, H Musto, ... Virology Journal 9, 1-8, 2012 | 53 | 2012 |
| A detailed comparative analysis of codon usage bias in Zika virus J Cristina, A Fajardo, M Soñora, G Moratorio, H Musto Virus Research 223, 147-152, 2016 | 45 | 2016 |
| Prevalence and molecular epidemiology of bovine leukemia virus in Colombian cattle AP Corredor-Figueroa, S Salas, NN Olaya-Galán, JS Quintero, Á Fajardo, ... Infection, Genetics and Evolution 80, 104171, 2020 | 37 | 2020 |
| Wrapping up viruses at multiscale resolution: optimizing PACKMOL and SIRAH execution for simulating the zika virus M Soñora, L Martinez, S Pantano, MR Machado Journal of Chemical Information and Modeling 61 (1), 408-422, 2021 | 22 | 2021 |
| Host influence in the genomic composition of flaviviruses: A multivariate approach D Simón, A Fajardo, M Sóñora, A Delfraro, H Musto Biochemical and Biophysical Research Communications 492 (4), 572-578, 2017 | 22 | 2017 |
| The SIRAH force field: a suite for simulations of complex biological systems at the coarse-grained and multiscale levels F Klein, M Soñora, LH Santos, EN Frigini, A Ballesteros-Casallas, ... Journal of structural biology 215 (3), 107985, 2023 | 16 | 2023 |
| Naturally occurring NS3 resistance-associated variants in hepatitis C virus genotype 1: their relevance for developing countries N Echeverría, G Betancour, F Gámbaro, N Hernández, P López, D Chiodi, ... Virus Research 223, 140-146, 2016 | 16 | 2016 |
| Pretreatment hepatitis C virus NS5A/NS5B resistance‐associated substitutions in genotype 1 Uruguayan infected patients F Aldunate, N Echeverría, D Chiodi, P López, A Sánchez-Cicerón, ... Disease Markers 2018 (1), 2514901, 2018 | 15 | 2018 |
| The SIRAH-CoV-2 Initiative: a coarse-grained simulations' dataset of the sars-cov-2 proteome PG Garay, EE Barrera, F Klein, MR Machado, M Soñora, S Pantano Frontiers in Medical Technology 3, 644039, 2021 | 14 | 2021 |
| Bayesian coalescent inference reveals high evolutionary rates and diversification of Zika virus populations A Fajardo, M Soñora, P Moreno, G Moratorio, J Cristina Journal of Medical Virology 88 (10), 1672-1676, 2016 | 14 | 2016 |
| An evolutionary insight into Newcastle disease viruses isolated in Antarctica M Sonora, P Moreno, N Echeverría, S Fischer, V Comas, A Fajardo, ... Archives of virology 160, 1893-1900, 2015 | 12 | 2015 |
| Evidence of increasing diversification of Zika virus strains isolated in the American continent F Aldunate, F Gámbaro, A Fajardo, M Soñora, J Cristina Journal of medical virology 89 (12), 2059-2063, 2017 | 7 | 2017 |
| The stressed life of a lipid in the Zika virus membrane M Soñora, EE Barrera, S Pantano Biochimica et Biophysica Acta (BBA)-Biomembranes 1864 (1), 183804, 2022 | 6 | 2022 |
| Phylogenetic analysis of the neuraminidase gene of pandemic H1N1 influenza A virus circulating in the South American region V Comas, G Moratorio, M Sonora, N Goñi, S Pereyra, S Ifran, P Moreno, ... Virus research 197, 1-7, 2015 | 5 | 2015 |
| Bayesian coalescent analysis of pandemic H1N1 influenza A virus circulating in the South American region N Goni, G Moratorio, L Coppola, V Ramas, V Comas, M Soñora, ... Virus research 170 (1-2), 91-101, 2012 | 5 | 2012 |
| Resistance-associated substitutions and response to treatment in a chronic hepatitis C virus infected-patient: an unusual virological response case report F Aldunate, N Echeverría, D Chiodi, P López, A Sánchez-Cicerón, ... BMC Infectious Diseases 21 (1), 387, 2021 | 3 | 2021 |
| Variabilidad genética y mecanismos evolutivos de virus ARN: aproximación al análisis de cuasiespecies M Sóñora Udelar. FC., 2018 | 1 | 2018 |
| Mixed Infections Unravel Novel HCV Inter-Genotypic Recombinant Forms within the Conserved IRES Region N Echeverría, F Gámbaro, S Beaucourt, M Soñora, N Hernández, ... Viruses 16 (4), 560, 2024 | | 2024 |
| Resistance-associated substitutions and response to treatment in a chronic hepatitis C virus infected-patient: an unusual virological response case report F Aldunate Caramori, N Echeverría Chagas, D Chiodi, P López, ... BMC Infectious Diseases, 2021, 21: 387., 2021 | | 2021 |
