The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7, 1-17, 2015 | 352 | 2015 |
An information extraction framework for cohort identification using electronic health records H Liu, SJ Bielinski, S Sohn, S Murphy, KB Wagholikar, SR Jonnalagadda, ... AMIA Summits on Translational Science Proceedings 2013, 149, 2013 | 190 | 2013 |
A biological named entity recognizer M Narayanaswamy, KE Ravikumar, K Vijay-Shanker Biocomputing 2003, 427-438, 2002 | 181 | 2002 |
Literature mining and database annotation of protein phosphorylation using a rule-based system ZZ Hu, M Narayanaswamy, KE Ravikumar, K Vijay-Shanker, CH Wu Bioinformatics 21 (11), 2759-2765, 2005 | 124 | 2005 |
Toward a learning health-care system–knowledge delivery at the point of care empowered by big data and NLP VC Kaggal, RK Elayavilli, S Mehrabi, JJ Pankratz, S Sohn, Y Wang, D Li, ... Biomedical informatics insights 8, BII. S37977, 2016 | 81 | 2016 |
Automated chart review for asthma cohort identification using natural language processing: an exploratory study ST Wu, S Sohn, KE Ravikumar, K Wagholikar, SR Jonnalagadda, H Liu, ... Annals of Allergy, Asthma & Immunology 111 (5), 364-369, 2013 | 78 | 2013 |
Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification S Sohn, KB Wagholikar, D Li, SR Jonnalagadda, C Tao, ... Journal of the American Medical Informatics Association 20 (5), 836-842, 2013 | 73 | 2013 |
Beyond the clause: extraction of phosphorylation information from medline abstracts M Narayanaswamy, KE Ravikumar, K Vijay-Shanker Bioinformatics 21 (suppl_1), i319-i327, 2005 | 62 | 2005 |
Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. KE Ravikumar, KB Wagholikar, D Li, JP Kocher, H Liu BMC Bioinformatics 16 (1), 185, 2015 | 60* | 2015 |
BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences KE Ravikumar, M Rastegar-Mojarad, H Liu Database 2017, baw156, 2017 | 54 | 2017 |
Literature mining of protein-residue associations with graph rules learned through distant supervision KE Ravikumar, H Liu, JD Cohn, ME Wall, K Verspoor Journal of biomedical semantics 3, 1-23, 2012 | 49 | 2012 |
From graphs to events: A subgraph matching approach for information extraction from biomedical text H Liu, R Komandur, K Verspoor Proceedings of BioNLP Shared Task 2011 Workshop, 164-172, 2011 | 44 | 2011 |
A new method for prioritizing drug repositioning candidates extracted by literature-based discovery M Rastegar-Mojarad, RK Elayavilli, D Li, R Prasad, H Liu 2015 IEEE international conference on Bioinformatics and Biomedicine (BIBM …, 2015 | 43 | 2015 |
Diverting intracellular trafficking of Salmonella to the lysosome through activation of the late endocytic Rab7 by intracellular delivery of muramyl dipeptide K Mukherjee, S Parashuraman, G Krishnamurthy, J Majumdar, A Yadav, ... Journal of cell science 115 (18), 3693-3701, 2002 | 40 | 2002 |
Detecting signals in noisy data-can ensemble classifiers help identify adverse drug reaction in tweets M Rastegar-Mojarad, RK Elayavilli, Y Yu, H Liu Proceedings of the Social Media Mining Shared Task Workshop at the Pacific …, 2016 | 39 | 2016 |
An online literature mining tool for protein phosphorylation X Yuan, ZZ Hu, HT Wu, M Torii, M Narayanaswamy, KE Ravikumar, ... Bioinformatics 22 (13), 1668-1669, 2006 | 38 | 2006 |
Immune-related adverse events associated with immune checkpoint inhibitors: a call to action for collecting and sharing clinical trial and real-world data KL Reynolds, S Arora, RK Elayavilli, WC Louv, TH Schaller, A Khandelwal, ... Journal for ImmunoTherapy of Cancer 9 (7), 2021 | 35 | 2021 |
Extracting chemical–protein relations using attention-based neural networks S Liu, F Shen, R Komandur Elayavilli, Y Wang, M Rastegar-Mojarad, ... Database 2018, bay102, 2018 | 35 | 2018 |
Text mining improves prediction of protein functional sites KM Verspoor, JD Cohn, KE Ravikumar, ME Wall PloS one 7 (2), e32171, 2012 | 35 | 2012 |
Effect of a novel clinical decision support tool on the efficiency and accuracy of treatment recommendations for cholesterol management MR Scheitel, ME Kessler, JL Shellum, SG Peters, DS Milliner, H Liu, ... Applied clinical informatics 26 (01), 124-136, 2017 | 34 | 2017 |