| Protein translocation across the ER membrane R Zimmermann, S Eyrisch, M Ahmad, V Helms Biochimica et Biophysica Acta (BBA)-Biomembranes 1808 (3), 912-924, 2011 | 335 | 2011 |
| Adhesive water networks facilitate binding of protein interfaces M Ahmad, W Gu, T Geyer, V Helms Nature communications 2 (1), 261, 2011 | 174 | 2011 |
| Interaction of calmodulin with Sec61α limits Ca2+ leakage from the endoplasmic reticulum F Erdmann, N Schäuble, S Lang, M Jung, A Honigmann, M Ahmad, ... The EMBO journal 30 (1), 17-31, 2011 | 131 | 2011 |
| A geometric deep learning approach to predict binding conformations of bioactive molecules O Méndez-Lucio, M Ahmad, EA del Rio-Chanona, JK Wegner Nature Machine Intelligence 3 (12), 1033-1039, 2021 | 129 | 2021 |
| Mechanism of fast peptide recognition by SH3 domains M Ahmad, W Gu, V Helms Angewandte Chemie International Edition 47 (40), 7626-7630, 2008 | 102 | 2008 |
| Enthalpy–entropy compensation upon molecular conformational changes M Ahmad, V Helms, T Lengauer, OV Kalinina Journal of Chemical Theory and Computation 11 (4), 1410-1418, 2015 | 36 | 2015 |
| Relative Principal Components Analysis: Application to Analyzing Biomolecular Conformational Changes M Ahmad, V Helms, OV Kalinina, T Lengauer J. Chem. Theory Comput., 2019 | 16 | 2019 |
| Relative Principal Components Analysis: Application to Analyzing Biomolecular Conformational Changes M Ahmad, V Helms, OV Kalinina, T Lengauer bioRxiv, 409474, 2018 | 16 | 2018 |
| The role of conformational changes in molecular recognition M Ahmad, V Helms, OV Kalinina, T Lengauer The Journal of Physical Chemistry B 120 (9), 2138-2144, 2016 | 16 | 2016 |
| Prognostic factors for retroperitoneal soft-tissue sarcoma M El-Baradi, M Ahmad, M Abd El-Ghany, M Manar, E Gamal J Egyptian Nat Cancer Inst 15 (4), 265-274, 2003 | 10 | 2003 |
| Entropy gain due to water release upon ligand binding M Ahmad, O Kalinina, T Lengauer Journal of Cheminformatics 6, 1-1, 2014 | 9 | 2014 |
| How do proteins associate? A lesson from SH3 domain M Ahmad, V Helms Chemistry Central Journal 3 (Suppl 1), O22, 2009 | 6 | 2009 |
| Using smartphone application to notify muslim travelers the Jama’Qasar Pray, Azan times and other facilities Y Ej-Ebiary, SIA Saany, MNA Rahman, E Alwi, M Mohamad, MMT Ahmad International Journal of Engineering and Advanced Technology 8 (2), 366-370, 2019 | 5 | 2019 |
| How Molecular Conformational Changes Affect Changes in Free Energy M Ahmad, V Helms, T Lengauer, OV Kalinina Journal of Chemical Theory and Computation 11 (7), 2945-2957, 2015 | 4 | 2015 |
| Elucidating the energetic contributions to the binding free energy M Ahmad, V Helms, OV Kalinina, T Lengauer The Journal of Chemical Physics 146 (1), 2017 | 3 | 2017 |
| ACEGEN: Reinforcement learning of generative chemical agents for drug discovery A Bou, M Thomas, S Dittert, C Navarro, M Majewski, Y Wang, S Patel, ... Journal of Chemical Information and Modeling, 2024 | 2 | 2024 |
| Utilization of implantable cardioverter-defibrillators in patients with heart transplant (from National Inpatient Sample Database) AMK Minhas, SMM Shah, I Shahid, TJ Siddiqi, MS Arshad, V Jain, ... The American Journal of Cardiology 175, 65-71, 2022 | 2 | 2022 |
| PromptSMILES: prompting for scaffold decoration and fragment linking in chemical language models M Thomas, M Ahmad, G Tresadern, G de Fabritiis Journal of Cheminformatics 16 (1), 77, 2024 | 1 | 2024 |
| Binding Affinity Prediction with 3D Machine Learning: Training Data and Challenging External Testing JC Gómez-Tamayo, L Cao, M Ahmad, G Tresadern | 1 | 2024 |
| Adhesive Water Networks Facilitate Binding of Hydrophilic Protein Interfaces M Ahmad, W Gu, T Geyer, V Helms Biophysical Journal 100 (3), 198a, 2011 | 1 | 2011 |
