Molecular dynamics simulations of large macromolecular complexes JR Perilla, BC Goh, CK Cassidy, B Liu, RC Bernardi, T Rudack, H Yu, ... Current opinion in structural biology 31, 64-74, 2015 | 449 | 2015 |
In situ structure of neuronal C9orf72 poly-GA aggregates reveals proteasome recruitment Q Guo, C Lehmer, A Martínez-Sánchez, T Rudack, F Beck, H Hartmann, ... Cell 172 (4), 696-705. e12, 2018 | 390 | 2018 |
Structure of the human 26S proteasome at a resolution of 3.9 Å A Schweitzer, A Aufderheide, T Rudack, F Beck, G Pfeifer, JM Plitzko, ... Proceedings of the National Academy of Sciences 113 (28), 7816-7821, 2016 | 223 | 2016 |
QwikMD—integrative molecular dynamics toolkit for novices and experts JV Ribeiro, RC Bernardi, T Rudack, JE Stone, JC Phillips, PL Freddolino, ... Scientific reports 6 (1), 1-14, 2016 | 196 | 2016 |
NAMD goes quantum: an integrative suite for hybrid simulations MCR Melo, RC Bernardi, T Rudack, M Scheurer, C Riplinger, JC Phillips, ... Nature methods 15 (5), 351-354, 2018 | 194 | 2018 |
Structural insights into the functional cycle of the ATPase module of the 26S proteasome M Wehmer, T Rudack, F Beck, A Aufderheide, G Pfeifer, J Plitzko, ... Proceedings of the National Academy of Sciences 114 (6), 1305-1310, 2017 | 169 | 2017 |
N-Ras forms dimers at POPC membranes J Güldenhaupt, T Rudack, P Bachler, D Mann, G Triola, H Waldmann, ... Biophysical journal 103 (7), 1585-1593, 2012 | 158 | 2012 |
Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating MR Eisele, RG Reed, T Rudack, A Schweitzer, F Beck, I Nagy, G Pfeifer, ... Cell reports 24 (5), 1301-1315. e5, 2018 | 121 | 2018 |
Structural insights into photosystem II assembly J Zabret, S Bohn, SK Schuller, O Arnolds, M Möller, J Meier-Credo, ... Nature plants 7 (4), 524-538, 2021 | 117 | 2021 |
Insights into the assembly and activation of the microtubule nucleator γ-TuRC P Liu, E Zupa, A Neuner, A Böhler, J Loerke, D Flemming, T Ruppert, ... Nature 578 (7795), 467-471, 2020 | 109 | 2020 |
Ras and GTPase-activating protein (GAP) drive GTP into a precatalytic state as revealed by combining FTIR and biomolecular simulations T Rudack, F Xia, J Schlitter, C Kötting, K Gerwert Proceedings of the National Academy of Sciences 109 (38), 15295-15300, 2012 | 94 | 2012 |
PyContact: Rapid, customizable, and visual analysis of noncovalent interactions in MD simulations M Scheurer, P Rodenkirch, M Siggel, RC Bernardi, K Schulten, ... Biophysical journal 114 (3), 577-583, 2018 | 92 | 2018 |
Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity TK Gupta, S Klumpe, K Gries, S Heinz, W Wietrzynski, N Ohnishi, ... Cell 184 (14), 2021 | 90 | 2021 |
Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity TK Gupta, S Klumpe, K Gries, S Heinz, W Wietrzynski, N Ohnishi, ... bioRxiv, 2020 | 90 | 2020 |
Computational methodologies for real-space structural refinement of large macromolecular complexes BC Goh, JA Hadden, RC Bernardi, A Singharoy, R McGreevy, T Rudack, ... Annual review of biophysics 45, 253-278, 2016 | 79 | 2016 |
Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle P Majumder, T Rudack, F Beck, R Danev, G Pfeifer, I Nagy, W Baumeister Proceedings of the National Academy of Sciences 116 (2), 534-539, 2019 | 70 | 2019 |
The role of magnesium for geometry and charge in GTP hydrolysis, revealed by quantum mechanics/molecular mechanics simulations T Rudack, F Xia, J Schlitter, C Kötting, K Gerwert Biophysical journal 103 (2), 293-302, 2012 | 68 | 2012 |
GTP hydrolysis without an active site base: A unifying mechanism for ras and related GTPases AR Calixto, C Moreira, A Pabis, C Kötting, K Gerwert, T Rudack, ... Journal of the American Chemical Society 141 (27), 10684-10701, 2019 | 54 | 2019 |
Detailed Structure of the H2PO4––Guanosine Diphosphate Intermediate in Ras-GAP Decoded from FTIR Experiments by Biomolecular Simulations F Xia, T Rudack, Q Cui, C Kötting, K Gerwert Journal of the American Chemical Society 134 (49), 20041-20044, 2012 | 35 | 2012 |
Lamprey Parapinopsin (“UVLamP”): a bistable UV‐sensitive optogenetic switch for ultrafast control of GPCR pathways D Eickelbeck, T Rudack, SA Tennigkeit, T Surdin, R Karapinar, ... ChemBioChem 21 (5), 612, 2020 | 30 | 2020 |