Acid activation mechanism of the influenza A M2 proton channel R Liang, JMJ Swanson, JJ Madsen, M Hong, WF DeGrado, GA Voth Proceedings of the National Academy of Sciences 113 (45), E6955–E6964, 2016 | 106 | 2016 |
Binding of serotonin to lipid membranes GH Peters, C Wang, N Cruys-Bagger, GF Velardez, JJ Madsen, P Westh Journal of the American Chemical Society 135 (6), 2164-2171, 2013 | 66 | 2013 |
Headgroup structure and cation binding in phosphatidylserine lipid bilayers H Antila, P Buslaev, F Favela-Rosales, TM Ferreira, I Gushchin, ... The Journal of Physical Chemistry B 123 (43), 9066-9079, 2019 | 60 | 2019 |
Entropic forces drive clustering and spatial localization of influenza A M2 during viral budding JJ Madsen, JMA Grime, JS Rossman, GA Voth Proceedings of the National Academy of Sciences 115 (37), E8595–E8603, 2018 | 55 | 2018 |
Factor VIII Interacts with the Endocytic Receptor Low-Density Lipoprotein Receptor-Related Protein 1 via an Extended Surface Comprising 'Hot-Spot' Lysine Residues M van den Biggelaar, JJ Madsen, JH Faber, MG Zuurveld, ... Journal of Biological Chemistry 290 (27), 16463-16476, 2015 | 38 | 2015 |
Systematic coarse-grained lipid force fields with semiexplicit solvation via virtual sites AJ Pak, T Dannenhoffer-Lafage, JJ Madsen, GA Voth Journal of Chemical Theory and Computation 15 (3), 2087-2100, 2019 | 34 | 2019 |
Membrane interaction of the factor VIIIa discoidin domains in atomistic detail JJ Madsen, YZ Ohkubo, GH Peters, JH Faber, E Tajkhorshid, OH Olsen Biochemistry 54, 6123-6131, 2015 | 31 | 2015 |
Inverse conformational selection in lipid–protein binding A Bacle, P Buslaev, R Garcia-Fandino, F Favela-Rosales, ... Journal of the American Chemical Society 143 (34), 13701-13709, 2021 | 30 | 2021 |
Tissue factor activates allosteric networks in factor VIIa through structural and dynamic changes JJ Madsen, E Persson, OH Olsen Journal of Thrombosis and Haemostasis 13 (2), 262-267, 2015 | 30 | 2015 |
Interaction of neurotransmitters with a phospholipid bilayer: A molecular dynamics study GH Peters, M Werge, MN Elf-Lind, JJ Madsen, GF Velardez, P Westh Chemistry and physics of lipids 184, 7-17, 2014 | 29 | 2014 |
The potential of 19F NMR application in GPCR biased drug discovery X Wang, A McFarland, JJ Madsen, E Aalo, L Ye Trends in Pharmacological Sciences 42 (1), 19-30, 2021 | 23 | 2021 |
Cholesterol alters the orientation and activity of the influenza virus M2 amphipathic helix in the membrane A Martyna, B Bahsoun, JJ Madsen, FSJS Jackson, MD Badham, GA Voth, ... The Journal of Physical Chemistry B 124 (31), 6738-6747, 2020 | 23 | 2020 |
Molecular Basis of Enhanced Activity in Factor VIIa-Trypsin Variants Conveys Insights into Tissue Factor-Mediated Allosteric Regulation of Factor VIIa Activity AB Sorensen, JJ Madsen, LA Svensson, AA Pedersen, H Østergaard, ... Journal of Biological Chemistry 291 (9), 4671-4683, 2016 | 21 | 2016 |
Highly Coarse-Grained Representations of Transmembrane Proteins JJ Madsen, AV Sinitskiy, J Li, GA Voth Journal of Chemical Theory and Computation 13 (2), 935-944, 2017 | 19 | 2017 |
Efficient simulation of tunable lipid assemblies across scales and resolutions JMA Grime, JJ Madsen arXiv preprint arXiv:1910.05362, 2019 | 17 | 2019 |
Small-Angle X-ray Scattering Data in Combination with RosettaDock Improves the Docking Energy Landscape P Sønderby, Å Rinnan, JJ Madsen, P Harris, JT Bukrinski, GH Peters Journal of Chemical Information and Modeling 57 (10), 2463-2475, 2017 | 17 | 2017 |
Overlay databank unlocks data-driven analyses of biomolecules for all AM Kiirikki, HS Antila, LS Bort, P Buslaev, F Favela-Rosales, TM Ferreira, ... Nature Communications 15 (1), 1136, 2024 | 13* | 2024 |
Quantitative comparison against experiments reveals imperfections in force fields’ descriptions of popc–cholesterol interactions M Javanainen, P Heftberger, JJ Madsen, MS Miettinen, G Pabst, ... Journal of Chemical Theory and Computation 19 (18), 6342-6352, 2023 | 13 | 2023 |
Secretory Phospholipase A2 Activity toward Diverse Substrates JJ Madsen, L Linderoth, AK Subramanian, TL Andresen, GH Peters The Journal of Physical Chemistry B 115 (21), 6853-6861, 2011 | 12 | 2011 |
19F NMR: A promising tool for dynamic conformational studies of G protein-coupled receptors L Ye, X Wang, A McFarland, JJ Madsen Structure 30 (10), 1372-1384, 2022 | 10 | 2022 |