BEDTools: a flexible suite of utilities for comparing genomic features AR Quinlan, IM Hall Bioinformatics 26 (6), 841-842, 2010 | 22766 | 2010 |
A map of human genome variation from population scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061, 2010 | 8766 | 2010 |
BEDTools: the Swiss‐army tool for genome feature analysis AR Quinlan Current protocols in bioinformatics 47 (1), 11.12. 1-11.12. 34, 2014 | 2155 | 2014 |
Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018 | 1890 | 2018 |
LUMPY: a probabilistic framework for structural variant discovery RM Layer, C Chiang, AR Quinlan, IM Hall Genome biology 15, 1-19, 2014 | 1412 | 2014 |
BamTools: a C++ API and toolkit for analyzing and managing BAM files DW Barnett, EK Garrison, AR Quinlan, MP Strömberg, GT Marth Bioinformatics 27 (12), 1691-1692, 2011 | 928 | 2011 |
Demographic history and rare allele sharing among human populations S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ... Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011 | 715 | 2011 |
Copy number variation detection and genotyping from exome sequence data N Krumm, PH Sudmant, A Ko, BJ O'Roak, M Malig, BP Coe, AR Quinlan, ... Genome research 22 (8), 1525-1532, 2012 | 708 | 2012 |
Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers S Onengut-Gumuscu, WM Chen, O Burren, NJ Cooper, AR Quinlan, ... Nature genetics 47 (4), 381-386, 2015 | 684 | 2015 |
Mosdepth: quick coverage calculation for genomes and exomes BS Pedersen, AR Quinlan Bioinformatics 34 (5), 867-868, 2018 | 679 | 2018 |
Whole-genome sequencing and variant discovery in C. elegans LDW Hillier, GT Marth, AR Quinlan, D Dooling, G Fewell, D Barnett, P Fox, ... Nature methods 5 (2), 183-188, 2008 | 587 | 2008 |
SpeedSeq: ultra-fast personal genome analysis and interpretation C Chiang, RM Layer, GG Faust, MR Lindberg, DB Rose, EP Garrison, ... Nature methods 12 (10), 966-968, 2015 | 541 | 2015 |
GEMINI: integrative exploration of genetic variation and genome annotations U Paila, BA Chapman, R Kirchner, AR Quinlan PLoS computational biology 9 (7), e1003153, 2013 | 474 | 2013 |
Poretools: a toolkit for analyzing nanopore sequence data NJ Loman, AR Quinlan Bioinformatics 30 (23), 3399-3401, 2014 | 467 | 2014 |
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations RK Dale, BS Pedersen, AR Quinlan Bioinformatics 27 (24), 3423-3424, 2011 | 464 | 2011 |
Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010 | 458 | 2010 |
Rapid whole-genome mutational profiling using next-generation sequencing technologies DR Smith, AR Quinlan, HE Peckham, K Makowsky, W Tao, B Woolf, ... Genome research 18 (10), 1638-1642, 2008 | 362 | 2008 |
Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome AR Quinlan, RA Clark, S Sokolova, ML Leibowitz, Y Zhang, ME Hurles, ... Genome research 20 (5), 623-635, 2010 | 344 | 2010 |
Pyrobayes: an improved base caller for SNP discovery in pyrosequences AR Quinlan, DA Stewart, MP Strömberg, GT Marth Nature methods 5 (2), 179-181, 2008 | 340 | 2008 |
Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder JY An, K Lin, L Zhu, DM Werling, S Dong, H Brand, HZ Wang, X Zhao, ... Science 362 (6420), eaat6576, 2018 | 280 | 2018 |