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Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks A Wolf-Yadlin, S Hautaniemi, DA Lauffenburger, FM White Proceedings of the National Academy of Sciences 104 (14), 5860-5865, 2007 | 594 | 2007 |
Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer B Sahu, M Laakso, K Ovaska, T Mirtti, J Lundin, A Rannikko, A Sankila, ... The EMBO journal 30 (19), 3962-3976, 2011 | 420 | 2011 |
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Integrated network analysis platform for protein-protein interactions J Wu, T Vallenius, K Ovaska, J Westermarck, TP Mäkelä, S Hautaniemi Nature methods 6 (1), 75-77, 2009 | 361 | 2009 |
Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues S Kilpinen, R Autio, K Ojala, K Iljin, E Bucher, H Sara, T Pisto, M Saarela, ... Genome biology 9, 1-14, 2008 | 324 | 2008 |
Effects of HER2 overexpression on cell signaling networks governing proliferation and migration A Wolf‐Yadlin, N Kumar, Y Zhang, S Hautaniemi, M Zaman, HD Kim, ... Molecular systems biology 2 (1), 54, 2006 | 299 | 2006 |
FoxA1 specifies unique androgen and glucocorticoid receptor binding events in prostate cancer cells B Sahu, M Laakso, P Pihlajamaa, K Ovaska, I Sinielnikov, S Hautaniemi, ... Cancer research 73 (5), 1570-1580, 2013 | 269 | 2013 |
Are data from different gene expression microarray platforms comparable? AK Järvinen, S Hautaniemi, H Edgren, P Auvinen, J Saarela, ... Genomics 83 (6), 1164-1168, 2004 | 256 | 2004 |
Nonsense-mediated decay microarray analysis identifies mutations of EPHB2 in human prostate cancer P Huusko, D Ponciano-Jackson, M Wolf, JA Kiefer, DO Azorsa, S Tuzmen, ... Nature genetics 36 (9), 979-983, 2004 | 250 | 2004 |
RNAi microarray analysis in cultured mammalian cells S Mousses, NJ Caplen, R Cornelison, D Weaver, M Basik, S Hautaniemi, ... Genome research 13 (10), 2341-2347, 2003 | 236 | 2003 |
Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme K Ovaska, M Laakso, S Haapa-Paananen, R Louhimo, P Chen, ... Genome medicine 2, 1-12, 2010 | 229 | 2010 |
Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer A Färkkilä, DC Gulhan, J Casado, CA Jacobson, H Nguyen, ... Nature communications 11 (1), 1459, 2020 | 217 | 2020 |
Early recovery from cow's milk allergy is associated with decreasing IgE and increasing IgG4 binding to cow's milk epitopes EM Savilahti, V Rantanen, JS Lin, S Karinen, KM Saarinen, M Goldis, ... Journal of allergy and clinical immunology 125 (6), 1315-1321. e9, 2010 | 192 | 2010 |
Optimized LOWESS normalization parameter selection for DNA microarray data JA Berger, S Hautaniemi, AK Järvinen, H Edgren, SK Mitra, J Astola BMC bioinformatics 5, 1-13, 2004 | 179 | 2004 |
Characterising metabolically healthy obesity in weight-discordant monozygotic twins J Naukkarinen, S Heinonen, A Hakkarainen, J Lundbom, K Vuolteenaho, ... Diabetologia 57, 167-176, 2014 | 170 | 2014 |
High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on cDNA microarrays: impact of copy number on gene expression M Wolf, S Mousses, S Hautaniemi, R Karhu, P Huusko, M Allinen, ... Neoplasia 6 (3), 240-247, 2004 | 165 | 2004 |
Gene-expression profiling predicts recurrence in Dukes’ C colorectal cancer D Arango, P Laiho, A Kokko, P Alhopuro, H Sammalkorpi, R Salovaara, ... Gastroenterology 129 (3), 874-884, 2005 | 157 | 2005 |
Global Gene Expression Profile of Human Cord Blood–Derived CD133+ Cells T Jaatinen, H Hemmoranta, S Hautaniemi, J Niemi, D Nicorici, J Laine, ... Stem cells 24 (3), 631-641, 2006 | 154 | 2006 |
Candidate driver genes in microsatellite‐unstable colorectal cancer P Alhopuro, H Sammalkorpi, I Niittymäki, M Biström, A Raitila, J Saharinen, ... International journal of cancer 130 (7), 1558-1566, 2012 | 149 | 2012 |