The Human Tumor Atlas Network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 413 | 2020 |
Proteogenomic characterization of pancreatic ductal adenocarcinoma L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ... Cell 184 (19), 5031-5052. e26, 2021 | 311 | 2021 |
Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus NV Terekhanova, MD Logacheva, AA Penin, TV Neretina, ... PLoS genetics 10 (10), e1004696, 2014 | 150 | 2014 |
Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer D Cui Zhou, RG Jayasinghe, S Chen, JM Herndon, MD Iglesia, P Navale, ... Nature genetics 54 (9), 1390-1405, 2022 | 109 | 2022 |
Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment H Sun, S Cao, RJ Mashl, CK Mo, S Zaccaria, MC Wendl, SR Davies, ... Nature communications 12 (1), 5086, 2021 | 78 | 2021 |
Signaling pathways activation profiles make better markers of cancer than expression of individual genes NM Borisov, NV Terekhanova, AM Aliper, LS Venkova, PY Smirnov, ... Oncotarget 5 (20), 10198, 2014 | 78 | 2014 |
MITI minimum information guidelines for highly multiplexed tissue images D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ... Nature methods 19 (3), 262-267, 2022 | 47 | 2022 |
Proteogenomic data and resources for pan-cancer analysis Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan, F Aguet, Y Akiyama, ... Cancer cell 41 (8), 1397-1406, 2023 | 46 | 2023 |
Evolution of local mutation rate and its determinants NV Terekhanova, VB Seplyarskiy, RA Soldatov, GA Bazykin Molecular biology and evolution 34 (5), 1100-1109, 2017 | 36 | 2017 |
Pan-cancer proteogenomics connects oncogenic drivers to functional states Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron, V Stathias, ... Cell 186 (18), 3921-3944. e25, 2023 | 31 | 2023 |
Epigenetic regulation during cancer transitions across 11 tumour types NV Terekhanova, A Karpova, WW Liang, A Strzalkowski, S Chen, Y Li, ... Nature 623 (7986), 432-441, 2023 | 29 | 2023 |
Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation Y Geffen, S Anand, Y Akiyama, TM Yaron, Y Song, JL Johnson, ... Cell 186 (18), 3945-3967. e26, 2023 | 29 | 2023 |
Prevalence of Multinucleotide Replacements in Evolution of Primates and Drosophila NV Terekhanova, GA Bazykin, A Neverov, AS Kondrashov, ... Molecular biology and evolution 30 (6), 1315-1325, 2013 | 29 | 2013 |
Large-scale profiling of signalling pathways reveals an asthma specific signature in bronchial smooth muscle cells E Alexandrova, G Nassa, G Corleone, A Buzdin, AM Aliper, ... Oncotarget 7 (18), 25150, 2016 | 27 | 2016 |
Architecture of parallel adaptation in ten lacustrine threespine stickleback populations from the White Sea area NV Terekhanova, AE Barmintseva, AS Kondrashov, GA Bazykin, ... Genome biology and evolution 11 (9), 2605-2618, 2019 | 24 | 2019 |
Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin WW Liang, RJH Lu, RG Jayasinghe, SM Foltz, E Porta-Pardo, Y Geffen, ... Cancer Cell 41 (9), 1567-1585. e7, 2023 | 19 | 2023 |
Direct control of somatic stem cell proliferation factors by the Drosophila testis stem cell niche EA Albert, OA Puretskaia, NV Terekhanova, A Labudina, C Bökel Development 145 (17), dev156315, 2018 | 19 | 2018 |
Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma Y Wu, NV Terekhanova, W Caravan, N Naser Al Deen, P Lal, S Chen, ... Nature Communications 14 (1), 1681, 2023 | 16 | 2023 |
Transcriptome sequencing of hybrid bester sturgeon: Responses to poly (I: C) in the context of comparative immunogenomics N Mugue, N Terekhanova, S Afanasyev, A Krasnov Fish & shellfish immunology 93, 888-894, 2019 | 15 | 2019 |
PDXNet portal: patient-derived xenograft model, data, workflow and tool discovery S Koc, MW Lloyd, JW Grover, N Xiao, S Seepo, SL Subramanian, M Ray, ... NAR cancer 4 (2), zcac014, 2022 | 13 | 2022 |