| MetaPhlAn2 for enhanced metagenomic taxonomic profiling DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ... Nature methods 12 (10), 902-903, 2015 | 2031 | 2015 |
| The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature biotechnology 26 (5), 541-547, 2008 | 1361 | 2008 |
| Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 649-662. e20, 2019 | 1236 | 2019 |
| Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi, F Armanini, ... Cell host & microbe 24 (1), 133-145. e5, 2018 | 1028 | 2018 |
| Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019 | 687 | 2019 |
| Microbial strain-level population structure and genetic diversity from metagenomes DT Truong, A Tett, E Pasolli, C Huttenhower, N Segata Genome research 27 (4), 626-638, 2017 | 645 | 2017 |
| Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature Medicine 27 (2), 321-332, 2021 | 625 | 2021 |
| Strain-level microbial epidemiology and population genomics from shotgun metagenomics M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ... Nature methods 13 (5), 435-438, 2016 | 415 | 2016 |
| Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life M Yassour, E Jason, LJ Hogstrom, TD Arthur, S Tripathi, H Siljander, ... Cell host & microbe 24 (1), 146-154. e4, 2018 | 375 | 2018 |
| The Prevotella copri complex comprises four distinct clades underrepresented in Westernized populations A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ... Cell host & microbe 26 (5), 666-679. e7, 2019 | 338 | 2019 |
| Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferretti, ... MSystems 2 (1), 2017 | 336 | 2017 |
| Prevotella diversity, niches and interactions with the human host A Tett, E Pasolli, G Masetti, D Ercolini, N Segata Nature Reviews Microbiology, 1-15, 2021 | 335 | 2021 |
| Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology, 1-12, 2023 | 287 | 2023 |
| Distinct genetic and functional traits of human intestinal Prevotella copri strains are associated with different habitual diets F De Filippis, E Pasolli, A Tett, S Tarallo, A Naccarati, M De Angelis, ... Cell host & microbe 25 (3), 444-453. e3, 2019 | 285 | 2019 |
| Exploring vertical transmission of bifidobacteria from mother to child C Milani, L Mancabelli, GA Lugli, S Duranti, F Turroni, C Ferrario, ... Applied and environmental microbiology 81 (20), 7078, 2015 | 242 | 2015 |
| Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis A Tett, E Pasolli, S Farina, DT Truong, F Asnicar, M Zolfo, F Beghini, ... NPJ biofilms and microbiomes 3 (1), 1-12, 2017 | 179 | 2017 |
| Metagenomic sequencing with strain-level resolution implicates uropathogenic E. coli in necrotizing enterocolitis and mortality in preterm infants DV Ward, M Scholz, M Zolfo, DH Taft, KR Schibler, A Tett, N Segata, ... Cell reports 14 (12), 2912-2924, 2016 | 172 | 2016 |
| The person-to-person transmission landscape of the gut and oral microbiomes M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ... Nature, 1-11, 2023 | 171 | 2023 |
| Progress towards understanding the fate of plasmids in bacterial communities FR Slater, MJ Bailey, AJ Tett, SL Turner FEMS microbiology ecology 66 (1), 3-13, 2008 | 137 | 2008 |
| Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates H Fehlner-Peach, C Magnabosco, V Raghavan, JU Scher, A Tett, LM Cox, ... Cell Host & Microbe 26 (5), 680-690. e5, 2019 | 133 | 2019 |
