| Correlation AnalyzeR: functional predictions from gene co-expression correlations HE Miller, AJR Bishop BMC bioinformatics 22, 1-19, 2021 | 67 | 2021 |
| Cohesin SA1 and SA2 are RNA binding proteins that localize to RNA containing regions on DNA H Pan, M Jin, A Ghadiyaram, P Kaur, HE Miller, HM Ta, M Liu, Y Fan, ... Nucleic acids research 48 (10), 5639-5655, 2020 | 53 | 2020 |
| Pathogenic tau causes a toxic depletion of nuclear calcium R Mahoney, EO Thomas, P Ramirez, HE Miller, A Beckmann, G Zuniga, ... Cell reports 32 (2), 2020 | 32 | 2020 |
| Reconstruction of Ewing sarcoma developmental context from mass-scale transcriptomics reveals characteristics of EWSR1-FLI1 permissibility HE Miller, A Gorthi, N Bassani, LA Lawrence, BS Iskra, AJR Bishop Cancers 12 (4), 948, 2020 | 31 | 2020 |
| Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions HE Miller, D Montemayor, J Abdul, A Vines, SA Levy, SR Hartono, ... Nucleic acids research 50 (13), 7260-7286, 2022 | 15 | 2022 |
| Systematic analysis of long non-coding RNA genes in nonalcoholic fatty liver disease M Ilieva, J Dao, HE Miller, JH Madsen, AJR Bishop, S Kauppinen, ... Non-coding RNA 8 (4), 56, 2022 | 13 | 2022 |
| FibroDB: expression analysis of protein-coding and long non-coding RNA genes in fibrosis M Ilieva, HE Miller, A Agarwal, GK Paulus, JH Madsen, AJR Bishop, ... Non-coding RNA 8 (1), 13, 2022 | 13 | 2022 |
| Exploration and analysis of R-loop mapping data with RLBase HE Miller, D Montemayor, J Li, SA Levy, R Pawar, S Hartono, K Sharma, ... Nucleic acids research 51 (D1), D1129-D1137, 2023 | 10 | 2023 |
| Current status of epitranscriptomic marks affecting lncRNA structures and functions HE Miller, M Ilieva, AJR Bishop, S Uchida Non-coding RNA 8 (2), 23, 2022 | 8 | 2022 |
| Development and characterization of a mass cytometry panel for detecting the effect of acute doxorubicin exposure on murine cardiac nonmyocytes BS Iskra, L Davis, HE Miller, YC Chiu, AJR Bishop, Y Chen, GJ Aune American Journal of Physiology-Heart and Circulatory Physiology, 2022 | 3* | 2022 |
| Systematic analysis and characterization of long non-coding RNA genes in inflammatory bowel disease R Velissari, M Ilieva, J Dao, HE Miller, JH Madsen, J Gorodkin, M Aikawa, ... Briefings in Functional Genomics 23 (4), 395-405, 2024 | 2 | 2024 |
| Multi-omics analyses reveal novel effects of PLCγ2 deficiency in the mouse brain SC Hopp, JG Rogers, S Smith, G Campos, H Miller, S Barannikov, ... bioRxiv, 2023 | 1 | 2023 |
| RLSuite: An integrative R-loop bioinformatics framework HE Miller, D Montemayor, S Levy, K Sharma, B Frost, AJR Bishop Journal of bioinformatics and systems biology: Open access 6 (4), 364, 2023 | 1 | 2023 |
| ATM phosphorylation of CD98HC increases antiporter membrane localization and prevents chronic toxic glutamate accumulation in Ataxia telangiectasia A Bishop, JC Romero, S Tonapi, M Parihar, E Loranc, H Miller, ... Research Square, 2024 | | 2024 |
| Approaches for Mapping and Analysis of R‐loops P Mukhopadhyay, H Miller, A Stoja, AJR Bishop Current Protocols 4 (4), e1037, 2024 | | 2024 |
| NOVEL MOLECULAR MECHANISMS UNDERLYING THE ASSOCIATION BETWEEN PLCG2, ALZHEIMER’S DISEASE, AND LONGEVITY J Palavicini, J Garcia Rogers, H Miller, S Weintraub, S Hopp Innovation in Aging 7 (Supplement_1), 101-101, 2023 | | 2023 |
| Multi‐omics analyses reveal unexpected effects of PLCg2 deficiency in the brain JP Palavicini, HE Miller, S Smith, G Campos, SC Hopp Alzheimer's & Dementia 18, e069302, 2022 | | 2022 |
| Abstract A012: Targeting the dysregulation of transcription and splicing in Ewing sarcoma LA Lawrence, H Miller, A Bishop Clinical Cancer Research 28 (18_Supplement), A012-A012, 2022 | | 2022 |
| Deconstructing Organs: Single-Cell Analyses, Decellularized Organs, Organoids, and Organ-on-a-Chip Models: Development and characterization of a mass cytometry panel for … BS Iskra, L Davis, HE Miller, YC Chiu, AJR Bishop, Y Chen, GJ Aune American Journal of Physiology-Heart and Circulatory Physiology 323 (1), H130, 2022 | | 2022 |
| Bioinformatic Approaches for the Study of R-Loops HE Miller The University of Texas Health Science Center at San Antonio, 2022 | | 2022 |
