Cooperation between distinct cancer driver genes underlies intertumor heterogeneity in hepatocellular carcinoma P Molina-Sánchez, MR de Galarreta, MA Yao, KE Lindblad, E Bresnahan, ... Gastroenterology 159 (6), 2203-2220. e14, 2020 | 67 | 2020 |
Reverse engineering gene regulatory networks from measurement with missing values OE Ogundijo, A Elmas, X Wang EURASIP Journal on Bioinformatics and Systems Biology 2017 (1), 2, 2016 | 24 | 2016 |
Spatially interacting phosphorylation sites and mutations in cancer K Huang, AD Scott, DC Zhou, LB Wang, A Weerasinghe, A Elmas, R Liu, ... Nature communications 12 (1), 2313, 2021 | 19 | 2021 |
Discovering genome-wide tag SNPs based on the mutual information of the variants A Elmas, TH Ou Yang, X Wang, D Anastassiou Plos one 11 (12), e0167994, 2016 | 10 | 2016 |
Genetic dependency of Alzheimer’s disease-associated genes across cells and tissue types SK Jaladanki, A Elmas, GS Malave, K Huang Scientific Reports 11 (1), 1-8, 2021 | 8 | 2021 |
Pan-cancer proteogenomic investigations identify post-transcriptional kinase targets A Elmas, S Tharakan, S Jaladanki, MD Galsky, T Liu, K Huang Communications Biology 4 (1), 1112, 2021 | 7 | 2021 |
The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies A Elmas, X Wang, JM Dresch Plos one 12 (10), e0185570, 2017 | 5 | 2017 |
Proteomic analyses identify therapeutic targets in hepatocellular carcinoma A Elmas, A Lujambio, K Huang Frontiers in Oncology 12, 814120, 2022 | 4 | 2022 |
Reconstruction of novel transcription factor regulons through inference of their binding sites A Elmas, X Wang, MS Samoilov BMC bioinformatics 16, 1-10, 2015 | 4 | 2015 |
Maximum parsimony xor haplotyping by sparse dictionary selection A Elmas, GH Jajamovich, X Wang BMC genomics 14, 1-16, 2013 | 3 | 2013 |
Structural Analysis of Genomic and Proteomic Signatures Reveal Dynamic Expression of Intrinsically Disordered Regions in Breast Cancer and Tissue N Zatorski, Y Sun, A Elmas, C Dallago, T Karl, D Stein, B Rost, KL Huang, ... bioRxiv, 2023 | 1 | 2023 |
Designing dna barcodes orthogonal in melting temperature by simulated annealing optimization A Elmas, GH Jajamovich, X Wang, MS Samoilov nucleic acid therapeutics 23 (2), 140-151, 2013 | 1 | 2013 |
A Clinical Benchmark of Public Self-Supervised Pathology Foundation Models G Campanella, S Chen, R Verma, J Zeng, A Stock, M Croken, B Veremis, ... arXiv preprint arXiv:2407.06508, 2024 | | 2024 |
Associations of Circulating Biomarkers with Disease Risks: a Two-Sample Mendelian Randomization Study A Elmas, K Spehar, R Do, JM Castellano, K Huang International Journal of Molecular Sciences 25 (13), 7376, 2024 | | 2024 |
Multiscale protein networks systematically identify aberrant protein interactions and oncogenic regulators in seven cancer types WM Song, A Elmas, R Farias, P Xu, X Zhou, B Hopkins, K Huang, ... Journal of Hematology & Oncology 16 (1), 120, 2023 | | 2023 |
Mutation impact on mRNA versus protein expression across human cancers Y Liu, A Elmas, K Huang bioRxiv, 2023 | | 2023 |
Integrating common and rare genetic variants to predict cancer risks in diverse populations A Elmas, H Kittrell, K Huang Cancer Research 83 (7_Supplement), 1980-1980, 2023 | | 2023 |
Multiscale protein networks: de novo aberrant protein interactions and oncogenic regulators in seven cancer types WM Song, A Elmas, R Farias, P Xu, X Zhou, B Hopkins, K Huang, ... Cancer Research 83 (7_Supplement), 6540-6540, 2023 | | 2023 |
Abstract LB-329: Pancancer proteomic investigation identifies overexpressed kinases as novel cancer dependent targets A Elmas, P Molina-Sanchez, S Tharakan, S Jaladanki, T Liu, A Lujambio, ... Cancer Research 80 (16_Supplement), LB-329-LB-329, 2020 | | 2020 |
Topics in Signal Processing: applications in genomics and genetics A Elmas Columbia University, 2016 | | 2016 |