| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1334 | 2020 |
| iPSC-derived human microglia-like cells to study neurological diseases EM Abud, RN Ramirez, ES Martinez, LM Healy, CHH Nguyen, ... Neuron 94 (2), 278-293. e9, 2017 | 925 | 2017 |
| Regeneration of fat cells from myofibroblasts during wound healing MV Plikus, CF Guerrero-Juarez, M Ito, YR Li, PH Dedhia, Y Zheng, ... Science 355 (6326), 748-752, 2017 | 552 | 2017 |
| The cis-regulatory atlas of the mouse immune system H Yoshida, CA Lareau, RN Ramirez, SA Rose, B Maier, A Wroblewska, ... Cell 176 (4), 897-912. e20, 2019 | 360 | 2019 |
| The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments R Grieshaber-Bouyer, FA Radtke, P Cunin, G Stifano, A Levescot, ... Nature communications 12 (1), 2856, 2021 | 205 | 2021 |
| Gut CD4+ T cell phenotypes are a continuum molded by microbes, not by TH archetypes E Kiner, E Willie, B Vijaykumar, K Chowdhary, H Schmutz, J Chandler, ... Nature immunology 22 (2), 216-228, 2021 | 157 | 2021 |
| Prostaglandin E2 leads to the acquisition of DNMT3A-dependent tolerogenic functions in human myeloid-derived suppressor cells J Rodríguez-Ubreva, F Català-Moll, N Obermajer, D Álvarez-Errico, ... Cell reports 21 (1), 154-167, 2017 | 123 | 2017 |
| Dynamic gene regulatory networks of human myeloid differentiation RN Ramirez, NC El-Ali, MA Mager, D Wyman, A Conesa, A Mortazavi Cell systems 4 (4), 416-429. e3, 2017 | 122 | 2017 |
| Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 103 | 2020 |
| Slug regulates the Dll4-Notch-VEGFR2 axis to control endothelial cell activation and angiogenesis NW Hultgren, JS Fang, ME Ziegler, RN Ramirez, DTT Phan, MMS Hatch, ... Nature communications 11 (1), 5400, 2020 | 83 | 2020 |
| Deep learning of immune cell differentiation A Maslova, RN Ramirez, K Ma, H Schmutz, C Wang, C Fox, B Ng, ... Proceedings of the National Academy of Sciences 117 (41), 25655-25666, 2020 | 83 | 2020 |
| Maternal gut bacteria drive intestinal inflammation in offspring with neurodevelopmental disorders by altering the chromatin landscape of CD4+ T cells E Kim, D Paik, RN Ramirez, DG Biggs, Y Park, HK Kwon, GB Choi, ... Immunity 55 (1), 145-158. e7, 2022 | 78 | 2022 |
| Interferon-α-producing plasmacytoid dendritic cells drive the loss of adipose tissue regulatory T cells during obesity C Li, G Wang, P Sivasami, RN Ramirez, Y Zhang, C Benoist, D Mathis Cell metabolism 33 (8), 1610-1623. e5, 2021 | 75 | 2021 |
| Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps C Jansen, RN Ramirez, NC El-Ali, D Gomez-Cabrero, J Tegner, ... PLoS computational biology 15 (11), 2019 | 74 | 2019 |
| Apolipoprotein E LDL receptor-binding domain-containing high-density lipoprotein: a nanovehicle to transport curcumin, an antioxidant and anti-amyloid bioflavonoid P Khumsupan, R Ramirez, D Khumsupan, V Narayanaswami Biochimica et Biophysica Acta (BBA)-Biomembranes 1808 (1), 352-359, 2011 | 48 | 2011 |
| The gut microbiota promotes distal tissue regeneration via RORγ+ regulatory T cell emissaries BS Hanna, G Wang, S Galván-Peña, AO Mann, RN Ramirez, ... Immunity 56 (4), 829-846. e8, 2023 | 46 | 2023 |
| FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression RN Ramirez, K Chowdhary, J Leon, D Mathis, C Benoist Science immunology 7 (67), eabj9836, 2022 | 33 | 2022 |
| A microRNA expression and regulatory element activity atlas of the mouse immune system SA Rose, A Wroblewska, M Dhainaut, H Yoshida, JM Shaffer, ... Nature immunology 22 (7), 914-927, 2021 | 33 | 2021 |
| ImmGen at 15 SV Aguilar, O Aguilar, R Allan, EAD Amir, V Angeli, MN Artyomov, ... Nature immunology 21 (7), 700-703, 2020 | 30 | 2020 |
| TCF7L1 suppresses primitive streak gene expression to support human embryonic stem cell pluripotency RA Sierra, NP Hoverter, RN Ramirez, LM Vuong, A Mortazavi, BJ Merrill, ... Development 145 (4), dev161075, 2018 | 27 | 2018 |
