Analysis tool web services from the EMBL-EBI H McWilliam, W Li, M Uludag, S Squizzato, YM Park, N Buso, AP Cowley, ... Nucleic acids research 41 (W1), W597-W600, 2013 | 2037 | 2013 |
The EMBL-EBI bioinformatics web and programmatic tools framework W Li, A Cowley, M Uludag, T Gur, H McWilliam, S Squizzato, YM Park, ... Nucleic acids research 43 (W1), W580-W584, 2015 | 1183 | 2015 |
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ... Bioinformatics 29 (10), 1325-1332, 2013 | 296 | 2013 |
Sequenceserver: a modern graphical user interface for custom BLAST databases A Priyam, BJ Woodcroft, V Rai, I Moghul, A Munagala, F Ter, ... Molecular biology and evolution 36 (12), 2922-2924, 2019 | 250 | 2019 |
A simplified model for radiant heating and cooling panels IB Kilkis, SS Sager, M Uludag Simulation Practice and Theory 2 (2), 61-76, 1994 | 99 | 1994 |
Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA S Albaradei, A Magana-Mora, M Thafar, M Uludag, VB Bajic, T Gojobori, ... Gene 763, 100035, 2020 | 49 | 2020 |
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI S Squizzato, YM Park, N Buso, T Gur, A Cowley, W Li, M Uludag, S Pundir, ... Nucleic acids research 43 (W1), W585-W588, 2015 | 48 | 2015 |
The EMBRACE web service collection S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ... Nucleic acids research 38 (suppl_2), W683-W688, 2010 | 46 | 2010 |
Ila-2: An inductive learning algorithm for knowledge discovery MR Tolun, H Sever, M Uludag, SM Abu-Soud Cybernetics & Systems 30 (7), 609-628, 1999 | 44 | 1999 |
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts T Alam, M Uludag, M Essack, A Salhi, H Ashoor, JB Hanks, C Kapfer, ... Nucleic acids research 45 (5), 2838-2848, 2017 | 39 | 2017 |
Hybrid model for efficient prediction of poly (A) signals in human genomic DNA F Albalawi, A Chahid, X Guo, S Albaradei, A Magana-Mora, BR Jankovic, ... Methods 166, 31-39, 2019 | 23 | 2019 |
Soaplab2: more reliable Sesame door to bioinformatics programs M Senger, P Rice, A Bleasby, T Oinn, M Uludag Bioinformatics Open Source Conference, BOSC 8, 2008 | 19 | 2008 |
DES-mutation: system for exploring links of mutations and diseases V Kordopati, A Salhi, R Razali, A Radovanovic, F Tifratene, M Uludag, ... Scientific reports 8 (1), 13359, 2018 | 16 | 2018 |
Improved rule discovery performance on uncertainty M Tolun, H Sever, M Uludağ Research and Development in Knowledge Discovery and Data Mining, 310-321, 1998 | 15 | 1998 |
Predicting bone metastasis using gene expression-based machine learning models S Albaradei, M Uludag, MA Thafar, T Gojobori, M Essack, X Gao Frontiers in Genetics 12, 771092, 2021 | 12 | 2021 |
Automated counting of colony forming units using deep transfer learning from a model for congested scenes analysis SA Albaradei, F Napolitano, M Uludag, M Thafar, S Napolitano, M Essack, ... IEEE Access 8, 164340-164346, 2020 | 12 | 2020 |
PATHcre8: A Tool That Facilitates the Searching for Heterologous Biosynthetic Routes O Motwalli, M Uludag, I Mijakovic, M Alazmi, VB Bajic, T Gojobori, X Gao, ... ACS synthetic biology 9 (12), 3217-3227, 2020 | 10 | 2020 |
Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications M Alshahrani, A Almansour, A Alkhaldi, MA Thafar, M Uludag, M Essack, ... PeerJ 10, e13061, 2022 | 9 | 2022 |
Soaplab: open source web services framework for Bioinformatics programs M Senger, P Rice, A Bleasby, M Uludag The 10th Annual Bioinformatics Open Source Conference. Satellite Workshop of …, 2009 | 8 | 2009 |
A multi-relational rule discovery system M Uludağ, M Tolun, T Etzold Computer and Information Sciences-ISCIS 2003, 252-259, 2003 | 8 | 2003 |