Comparison of computational methods for Hi-C data analysis M Forcato, C Nicoletti, K Pal, CM Livi, F Ferrari, S Bicciato Nature methods 14 (7), 679-685, 2017 | 345 | 2017 |
lncRNome: a comprehensive knowledgebase of human long noncoding RNAs D Bhartiya, K Pal, S Ghosh, S Kapoor, S Jalali, B Panwar, S Jain, S Sati, ... Database 2013, bat034, 2013 | 167 | 2013 |
Hi-C analysis: from data generation to integration K Pal, M Forcato, F Ferrari Biophysical reviews 11, 67-78, 2019 | 94 | 2019 |
Global chromatin conformation differences in the Drosophila dosage compensated chromosome X K Pal, M Forcato, D Jost, T Sexton, C Vaillant, E Salviato, EMC Mazza, ... Nature communications 10 (1), 5355, 2019 | 30 | 2019 |
The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation M Singh, D Bhartiya, J Maini, M Sharma, AR Singh, S Kadarkaraisamy, ... Database 2014, bau011, 2014 | 9 | 2014 |
Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer–target gene regulatory interactions E Salviato, V Djordjilović, JM Hariprakash, I Tagliaferri, K Pal, F Ferrari Nucleic Acids Research 49 (17), e97-e97, 2021 | 8 | 2021 |
HiCBricks: building blocks for efficient handling of large Hi-C datasets K Pal, I Tagliaferri, CM Livi, F Ferrari Bioinformatics 36 (6), 1917-1919, 2020 | 6 | 2020 |
Biochemical properties of chromatin domains define genome compartmentalization F Lucini, C Petrini, E Salviato, K Pal, V Rosti, F Gorini, P Santarelli, ... Nucleic Acids Research, gkae454, 2024 | 2 | 2024 |
A ChIC solution for ChIP-seq quality assessment CM Livi, I Tagliaferri, K Pal, E Sebestyén, F Lucini, A Bianchi, S Valsoni, ... bioRxiv, 2020.05. 19.103887, 2020 | 1 | 2020 |
Visualizing and Annotating Hi-C Data K Pal, F Ferrari Hi-C Data Analysis: Methods and Protocols, 97-132, 2022 | | 2022 |
Exploring changes in higher-order genome organisation during the coordinated transcriptional up-regulation in drosophila dosage compensation K Pal Università degli Studi di Milano, 2019 | | 2019 |
A comprehensive framework for ChIP-seq data quality assessment CM Livi, K Pal, E Sebestyén, F Ferrari | | |
Database tool The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation M Singh, D Bhartiya, J Maini, M Sharma, AR Singh, S Kadarkaraisamy, ... | | |