Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells AR Barutcu, BR Lajoie, RP McCord, CE Tye, D Hong, TL Messier, ... Genome Biology 16 (1), 214, 2015 | 228 | 2015 |
A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus AR Barutcu*, PG Maass, JP Lewandowski, CL Weiner, JL Rinn* Nature Communications 9 (1), 1444, 2018 | 131 | 2018 |
In vivo characterization of Linc-p21 reveals functional cis-regulatory DNA elements AF Groff, DB Sanchez-Gomez, MML Soruco, C Gerhardinger, AR Barutcu, ... Cell Reports 16 (8), 2178-2186, 2016 | 127 | 2016 |
Interchromosomal interactions: A genomic love story of kissing chromosomes PG Maass*, AR Barutcu*, JL Rinn J Cell Biol 218 (1), 27-38, 2019 | 113 | 2019 |
SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells AR Barutcu, BR Lajoie, AJ Fritz, RP McCord, JA Nickerson, AJ van Wijnen, ... Genome Research 26 (9), 1188-1201, 2016 | 102 | 2016 |
Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging (SNP-CLING) PG Maass, AR Barutcu, DM Shechner, CL Weiner, M Melé, JL Rinn Nature Structural & Molecular Biology, 176-184, 2018 | 92 | 2018 |
Inter-chromosomal contact properties in live-cell imaging and in Hi-C PG Maass, AR Barutcu, CL Weiner, JL Rinn Molecular Cell 69 (6), 1039-1045. e3, 2018 | 86 | 2018 |
Differential contribution of steady‐state RNA and active transcription in chromatin organization AR Barutcu*, BJ Blencowe, JL Rinn* EMBO Reports, 2019 | 74 | 2019 |
RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells AR Barutcu, D Hong, BR Lajoie, RP McCord, AJ van Wijnen, JB Lian, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (11 …, 2016 | 73 | 2016 |
C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization AR Barutcu, AJ Fritz, SK Zaidi, AJ van Wijnen, JB Lian, JL Stein, ... Journal of Cellular Physiology 231 (1), 2016 | 73 | 2016 |
Chromosomes at work: organization of chromosome territories in the interphase nucleus AJ Fritz, AR Barutcu, L Martin‐Buley, AJ van Wijnen, SK Zaidi, ... Journal of Cellular Biochemistry 117 (1), 9-19, 2016 | 60 | 2016 |
Yeast one-hybrid assays for gene-centered human gene regulatory network mapping JS Reece-Hoyes, AR Barutcu, RP McCord, JS Jeong, L Jiang, ... Nature Methods 8 (12), 1050, 2011 | 56 | 2011 |
Systematic mapping of nuclear domain-associated transcripts reveals speckles and lamina as hubs of functionally distinct retained introns AR Barutcu*, M Wu*, U Braunschweig, BJA Dyakov, Z Luo, KM Turner, ... Molecular Cell, 2022 | 54 | 2022 |
Intranuclear and higher‐order chromatin organization of the major histone gene cluster in breast cancer AJ Fritz, PN Ghule, JR Boyd, CE Tye, NA Page, D Hong, DJ Shirley, ... Journal of Cellular Physiology 233 (2), 1278-1290, 2018 | 47 | 2018 |
Enhancers in the Peril lincRNA locus regulate distant but not local genes AF Groff, AR Barutcu, JP Lewandowski, JL Rinn Genome Biology 19 (1), 219, 2018 | 34 | 2018 |
The connection between BRG1, CTCF and topoisomerases at TAD boundaries AR Barutcu, JB Lian, JL Stein, GS Stein, AN Imbalzano Nucleus 8 (2), 150-155, 2017 | 34 | 2017 |
Epigenetic control of cell cycle-dependent histone gene expression is a principal component of the abbreviated pluripotent cell cycle R Medina, PN Ghule, F Cruzat, AR Barutcu, M Montecino, JL Stein, ... Molecular and Cellular Biology 32 (19), 3860-3871, 2012 | 32 | 2012 |
Epigenetic landscape during osteoblastogenesis defines a differentiation-dependent Runx2 promoter region PWL Tai, H Wu, JAR Gordon, TW Whitfield, AR Barutcu, AJ Van Wijnen, ... Gene 550 (1), 1-9, 2014 | 31 | 2014 |
The bone-specific Runx2-P1 promoter displays conserved three-dimensional chromatin structure with the syntenic Supt3h promoter AR Barutcu, PWL Tai, H Wu, JAR Gordon, TW Whitfield, JR Dobson, ... Nucleic Acids Research 42 (16), 10360-10372, 2014 | 29 | 2014 |
Identifying nuclear matrix‐attached DNA across the genome JR Dobson, D Hong, AR Barutcu, H Wu, AN Imbalzano, JB Lian, JL Stein, ... Journal of Cellular Physiology 232 (6), 1295-1305, 2017 | 21 | 2017 |