| CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure A Varabyou, MJ Sommer, B Erdogdu, I Shinder, I Minkin, KH Chao, S Park, ... Genome biology 24 (1), 249, 2023 | 16 | 2023 |
| A reference-quality, fully annotated genome from a Puerto Rican individual AV Zimin, A Shumate, I Shinder, J Heinz, D Puiu, M Pertea, SL Salzberg Genetics 220 (2), iyab227, 2022 | 12 | 2022 |
| Back pressure ratio and the transonic resonance mechanism of low unchoking in critical flow Venturis JD Wright, BW Sims, RJ McKee, KA Gillis, AN Johnson, MS Carter, ... Proceedings of 17th conference on FLOMEKO 2016, 2016 | 8 | 2016 |
| Characterization of antipsychotic medications, amino acid signatures, and platelet-activating factor in first-episode psychosis BE Avigdor, K Yang, I Shinder, BC Orsburn, R Rais, S Kano, A Sawa, ... Biomarkers in Neuropsychiatry 5, 100045, 2021 | 5 | 2021 |
| EASTR: Identifying and eliminating systematic alignment errors in multi-exon genes I Shinder, R Hu, HJ Ji, KH Chao, M Pertea Nature communications 14 (1), 7223, 2023 | | 2023 |
| EASTR: Correcting systematic alignment errors in multi-exon genes I Shinder, R Hu, HJ Ji, KH Chao, M Pertea bioRxiv, 2023.05. 10.540179, 2023 | | 2023 |
| Optimized footprinting pipeline for profiling diseased cell state changes TJF Pranzatelli, D Michael, I Shinder, JA Chiorini CLINICAL AND EXPERIMENTAL RHEUMATOLOGY 36 (3), S289-S290, 2018 | | 2018 |
| RNA profiling and genome wide mapping of salivary gland gene regulation reveals core regulators of salivary flow and function DG Michael, T Pranzatelli, I Shinder, B Warner, JA Chiorini CLINICAL AND EXPERIMENTAL RHEUMATOLOGY 36 (3), S309-S309, 2018 | | 2018 |
