Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription–translation (TX-TL) systems MK Takahashi, J Chappell, CA Hayes, ZZ Sun, J Kim, V Singhal, ... ACS synthetic biology 4 (5), 503-515, 2015 | 177 | 2015 |
DUBStepR is a scalable correlation-based feature selection method for accurately clustering single-cell data B Ranjan, W Sun, J Park, K Mishra, F Schmidt, R Xie, F Alipour, V Singhal, ... Nature Communications 12 (1), 5849, 2021 | 46 | 2021 |
An in silico modeling toolbox for rapid prototyping of circuits in a biomolecular “breadboard” system ZA Tuza, V Singhal, J Kim, RM Murray 52nd IEEE Conference on Decision and Control, 1404-1410, 2013 | 32 | 2013 |
Protein degradation in a TX-TL cell-free expression system using ClpXP protease ZZ Sun, J Kim, V Singhal, RM Murray BioRxiv, 019695, 2015 | 13 | 2015 |
BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis V Singhal, N Chou, J Lee, Y Yue, J Liu, WK Chock, L Lin, YC Chang, ... Nature Genetics 56 (3), 431-441, 2024 | 12 | 2024 |
BANKSY: a spatial omics algorithm that unifies cell type clustering and tissue domain segmentation V Singhal, N Chou, J Lee, J Liu, WK Chock, L Lin, YC Chang, E Teo, ... bioRxiv, 2022.04. 14.488259, 2022 | 12 | 2022 |
A MATLAB toolbox for modeling genetic circuits in cell-free systems† V Singhal, ZA Tuza, ZZ Sun, RM Murray Synthetic Biology 6 (1), ysab007, 2021 | 10 | 2021 |
Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription-translation (TX-TL) systems. ACS Synth Biol 4 (5): 503–515 MK Takahashi, J Chappell, CA Hayes, ZZ Sun, J Kim, V Singhal, ... | 10 | 2015 |
Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription-translation (TX-TL) systems. ACS Synth Biol. 2015; 4 (5): 503–15 MK Takahashi, J Chappell, CA Hayes, ZZ Sun, J Kim, V Singhal, ... Epub 2014/03/14. https://doi. org/10.1021/sb400206c PMID: 24621257, 0 | 6 | |
DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data B Ranjan, W Sun, J Park, K Mishra, R Xie, F Alipour, V Singhal, F Schmidt, ... bioRxiv, 2020.10. 07.330563, 2020 | 5 | 2020 |
Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks XF Meng, AA Baetica, V Singhal, RM Murray Journal of The Royal Society Interface 14 (130), 20170157, 2017 | 3 | 2017 |
Transforming Data Across Environments Despite Structural Non-Identifiability V Singhal, RM Murray 2019 American Control Conference (ACC), 5639-5646, 2019 | 2 | 2019 |
Modeling, Computation, and Characterization to Accelerate the Development of Synthetic Gene Circuits in Cell-Free Extracts V Singhal California Institute of Technology, 2019 | 2 | 2019 |
Cell-free biomolecular breadboards and related methods and arrangements RM Murray, V Singhal US Patent 11,004,536, 2021 | 1 | 2021 |
BANKSY: scalable cell typing and domain segmentation for spatial omics V Singhal, N Chou Nature Reviews Genetics, 1-2, 2024 | | 2024 |
Erratum to: A MATLAB toolbox for modeling genetic circuits in cell-free systems V Singhal, ZA Tuza, ZZ Sun, RM Murray Synthetic Biology 6 (1), ysab016, 2021 | | 2021 |
Model-Based Batch Variability Reduction Despite Parameter Structural Non-Identifiability V Singhal, RM Murray | | |
System composability and behavior prediction of genetic networks from characterized models of subsystems V Singhal | | |
Supplementary Information for A MATLAB Toolbox for Modeling Genetic Circuits in Cell-Free Systems V Singhal, ZA Tuza, ZZ Sun, RM Murray | | |
Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability V Singhal, RM Murray | | |