| A comprehensive pathway map of epidermal growth factor receptor signaling K Oda, Y Matsuoka, A Funahashi, H Kitano Molecular systems biology 1 (1), 2005.0010, 2005 | 1549 | 2005 |
| The systems biology graphical notation NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009 | 1057 | 2009 |
| CellDesigner: a process diagram editor for gene-regulatory and biochemical networks A Funahashi, M Morohashi, H Kitano, N Tanimura Biosilico 1 (5), 159-162, 2003 | 785 | 2003 |
| CellDesigner 3.5: a versatile modeling tool for biochemical networks A Funahashi, Y Matsuoka, A Jouraku, M Morohashi, N Kikuchi, H Kitano Proceedings of the IEEE 96 (8), 1254-1265, 2008 | 576 | 2008 |
| Using process diagrams for the graphical representation of biological networks H Kitano, A Funahashi, Y Matsuoka, K Oda Nature biotechnology 23 (8), 961-966, 2005 | 575 | 2005 |
| Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project M Hucka, A Finney, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ... Systems biology 1 (1), 41-53, 2004 | 325 | 2004 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 223 | 2020 |
| COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms M Ostaszewski, A Mazein, ME Gillespie, I Kuperstein, A Niarakis, ... Scientific data 7 (1), 136, 2020 | 148 | 2020 |
| Detection of temperature difference in neuronal cells R Tanimoto, T Hiraiwa, Y Nakai, Y Shindo, K Oka, N Hiroi, A Funahashi Scientific reports 6 (1), 22071, 2016 | 130 | 2016 |
| Recursive diagonal torus: an interconnection network for massively parallel computers Y Yang, A Funahashi, A Jouraku, H Nishi, H Amano, T Sueyoshi IEEE Transactions on Parallel and Distributed Systems 12 (7), 701-715, 2001 | 108 | 2001 |
| Software support for SBGN maps: SBGN-ML and LibSBGN MP Van Iersel, AC Villéger, T Czauderna, SE Boyd, FT Bergmann, A Luna, ... Bioinformatics 28 (15), 2016-2021, 2012 | 104 | 2012 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 86 | 2021 |
| The principles of whole-cell modeling JR Karr, K Takahashi, A Funahashi Current opinion in microbiology 27, 18-24, 2015 | 84 | 2015 |
| Modeling and simulation using CellDesigner Y Matsuoka, A Funahashi, S Ghosh, H Kitano Transcription factor regulatory networks: Methods and protocols, 121-145, 2014 | 79 | 2014 |
| Integration of CellDesigner and SABIO-RK A Funahashi, A Jouraku, Y Matsuoka, H Kitano In silico biology 7 (2 Supplement), 81-90, 2007 | 78 | 2007 |
| L-turn routing: An adaptive routing in irregular networks M Koibuchi, A Funahashi, A Jouraku, H Amano International Conference on Parallel Processing, 2001., 383-392, 2001 | 77 | 2001 |
| Molecular interaction map of a macrophage K Oda, T Kimura, Y Matsuoka, A Funahashi, M Muramatsu, H Kitano AfCS Research Reports 2 (14), 1-12, 2004 | 75 | 2004 |
| High-speed microscopy with an electrically tunable lens to image the dynamics of in vivo molecular complexes Y Nakai, M Ozeki, T Hiraiwa, R Tanimoto, A Funahashi, N Hiroi, ... Review of Scientific Instruments 86 (1), 2015 | 61 | 2015 |
| CellDesigner: a modeling tool for biochemical networks A Funahashi, Y Matsuoka, A Jouraku, H Kitano, N Kikuchi Proceedings of the 2006 winter simulation conference, 1707-1712, 2006 | 58 | 2006 |
| The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1, 1-19, 2010 | 54 | 2010 |
Hiroaki KitanoThe Systems Biology Institute, Director / Sony Computer Science Laboratories, Inc., President and CEO / Okinawa Institute of Science and Technology, Professor在 sbi.jp 的电子邮件经过验证
