Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature methods 9 (7), 676-682, 2012 | 55328 | 2012 |
ImageJ2: ImageJ for the next generation of scientific image data CT Rueden, J Schindelin, MC Hiner, BE DeZonia, AE Walter, ET Arena, ... BMC bioinformatics 18, 1-26, 2017 | 5663 | 2017 |
The ImageJ ecosystem: An open platform for biomedical image analysis J Schindelin, CT Rueden, MC Hiner, KW Eliceiri Molecular reproduction and development 82 (7-8), 518-529, 2015 | 2698 | 2015 |
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017 | 1987 | 2017 |
Collagen density promotes mammary tumor initiation and progression PP Provenzano, DR Inman, KW Eliceiri, JG Knittel, L Yan, CT Rueden, ... BMC medicine 6, 1-15, 2008 | 1610 | 2008 |
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ... Bioinformatics 27 (8), 1179-1180, 2011 | 1130 | 2011 |
Metadata matters: access to image data in the real world M Linkert, CT Rueden, C Allan, JM Burel, W Moore, A Patterson, ... Journal of Cell Biology 189 (5), 777-782, 2010 | 1003 | 2010 |
Assessing microscope image focus quality with deep learning SJ Yang, M Berndl, D Michael Ando, M Barch, A Narayanaswamy, ... BMC bioinformatics 19, 1-9, 2018 | 162 | 2018 |
Tools for visualizing multidimensional images from living specimens KW Eliceiri, C Rueden Photochemistry and photobiology 81 (5), 1116-1122, 2005 | 162 | 2005 |
The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis AB Schroeder, ETA Dobson, CT Rueden, P Tomancak, F Jug, KW Eliceiri Protein Science 30 (1), 234-249, 2021 | 159 | 2021 |
Visualization approaches for multidimensional biological image data CT Rueden, KW Eliceiri BioTechniques 43 (S1), S31-S36, 2007 | 151 | 2007 |
Quantitating the cell: turning images into numbers with ImageJ ET Arena, CT Rueden, MC Hiner, S Wang, M Yuan, KW Eliceiri Wiley Interdisciplinary Reviews: Developmental Biology 6 (2), e260, 2017 | 147 | 2017 |
Nat Methods J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nat Methods 9 (7), 2012 | 118 | 2012 |
Nonlinear optical imaging and spectral-lifetime computational analysis of endogenous and exogenous fluorophores in breast cancer PP Provenzano, CT Rueden, SM Trier, L Yan, SM Ponik, DR Inman, ... Journal of Biomedical Optics 13 (3), 031220-031220-11, 2008 | 67 | 2008 |
714 Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. 2012. 715 Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nat Methods 9, 676-682, 0 | 49 | |
VisBio: a computational tool for visualization of multidimensional biological image data C Rueden, KW Eliceiri, JG White Traffic 5 (6), 411-417, 2004 | 48 | 2004 |
Integration of the ImageJ ecosystem in Knime analytics platform C Dietz, CT Rueden, S Helfrich, ETA Dobson, M Horn, J Eglinger, ... Frontiers in computer science 2, 8, 2020 | 34 | 2020 |
Applications of combined spectral lifetime microscopy for biology L Yan, CT Rueden, JG White, KW Eliceiri Biotechniques 41 (3), 249-257, 2006 | 34 | 2006 |
FLIMJ: an open-source ImageJ toolkit for fluorescence lifetime image data analysis D Gao, PR Barber, JV Chacko, MA Kader Sagar, CT Rueden, AR Grislis, ... PloS one 15 (12), e0238327, 2020 | 31 | 2020 |
ImageJ for the next generation of scientific image data CT Rueden, KW Eliceiri Microscopy and microanalysis 25 (S2), 142-143, 2019 | 31 | 2019 |