BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains AJ Hockenberry, CO Wilke PeerJ 9, e11396, 2021 | 149* | 2021 |
N-methyl-D-aspartate receptor mechanosensitivity is governed by C terminus of NR2B subunit P Singh, S Doshi, JM Spaethling, AJ Hockenberry, TP Patel, ... Journal of Biological Chemistry 287 (6), 4348-4359, 2012 | 79 | 2012 |
NR2A and NR2B subunits differentially mediate MAP kinase signaling and mitochondrial morphology following excitotoxic insult AM Choo, DM Geddes-Klein, A Hockenberry, D Scarsella, MN Mesfin, ... Neurochemistry international 60 (5), 506-516, 2012 | 66 | 2012 |
Synthetic in vitro circuits AJ Hockenberry, MC Jewett Current opinion in chemical biology 16 (3-4), 253-259, 2012 | 63 | 2012 |
Economic insecurity and the rise in gun violence at US schools AR Pah, J Hagan, AL Jennings, A Jain, K Albrecht, AJ Hockenberry, ... Nature Human Behaviour 1 (2), 1-6, 2017 | 54 | 2017 |
Quantifying position-dependent codon usage bias AJ Hockenberry, MI Sirer, LAN Amaral, MC Jewett Molecular biology and evolution 31 (7), 1880-1893, 2014 | 48 | 2014 |
Assembly and functionality of the ribosome with tethered subunits NA Aleksashin, M Leppik, AJ Hockenberry, D Klepacki, ... Nature communications 10 (1), 930, 2019 | 46 | 2019 |
Sequential Glycosylation of Proteins with Substrate-Specific N-Glycosyltransferases L Lin, W Kightlinger, SK Prabhu, AJ Hockenberry, C Li, LX Wang, ... ACS Central Science 6 (2), 144-154, 2020 | 39 | 2020 |
Clinical, genomic, and transcriptomic data profiling of biliary tract cancer reveals subtype-specific immune signatures K Mody, P Jain, SM El-Refai, NS Azad, DJ Zabransky, M Baretti, RT Shroff, ... JCO precision oncology 6, e2100510, 2022 | 36 | 2022 |
Mutational characterization and mapping of the 70S ribosome active site AE d’Aquino, T Azim, NA Aleksashin, AJ Hockenberry, A Krüger, ... Nucleic acids research 48 (5), 2777-2789, 2020 | 31 | 2020 |
Leveraging genome-wide datasets to quantify the functional role of the anti-Shine–Dalgarno sequence in regulating translation efficiency AJ Hockenberry, AR Pah, MC Jewett, LAN Amaral Open biology 7 (1), 160239, 2017 | 31 | 2017 |
Computational investigation of the changing patterns of subtype specific NMDA receptor activation during physiological glutamatergic neurotransmission P Singh, AJ Hockenberry, VR Tiruvadi, DF Meaney PLoS Computational Biology 7 (6), e1002106, 2011 | 31 | 2011 |
Diversity of translation initiation mechanisms across bacterial species is driven by environmental conditions and growth demands AJ Hockenberry, AJ Stern, LAN Amaral, MC Jewett Molecular biology and evolution 35 (3), 582-592, 2018 | 29 | 2018 |
Depletion of Shine-Dalgarno sequences within bacterial coding regions is expression dependent C Yang, AJ Hockenberry, MC Jewett, LAN Amaral G3: Genes, Genomes, Genetics 6 (11), 3467-3474, 2016 | 22 | 2016 |
Neisseria gonorrhoeae Exposed to Sublethal Levels of Hydrogen Peroxide Mounts a Complex Transcriptional Response SJ Quillin, AJ Hockenberry, MC Jewett, HS Seifert Msystems 3 (5), 10.1128/msystems. 00156-18, 2018 | 19 | 2018 |
Evolutionary couplings detect side-chain interactions AJ Hockenberry, CO Wilke PeerJ 7, e7280, 2019 | 16 | 2019 |
Phylogenetic weighting does little to improve the accuracy of evolutionary coupling analyses AJ Hockenberry, CO Wilke Entropy 21 (10), 1000, 2019 | 15 | 2019 |
Within-gene Shine–Dalgarno sequences are not selected for function AJ Hockenberry, MC Jewett, LAN Amaral, CO Wilke Molecular biology and evolution 35 (10), 2487-2498, 2018 | 15 | 2018 |
NullSeq: a tool for generating random coding sequences with desired amino acid and GC contents SS Liu, AJ Hockenberry, A Lancichinetti, MC Jewett, LAN Amaral PLoS computational biology 12 (11), e1005184, 2016 | 15 | 2016 |
A novel framework for evaluating the performance of codon usage bias metrics SS Liu, AJ Hockenberry, MC Jewett, LAN Amaral Journal of The Royal Society Interface 15 (138), 20170667, 2018 | 11 | 2018 |