NCBI disease corpus: a resource for disease name recognition and concept normalization RI Doğan, R Leaman, Z Lu Journal of biomedical informatics 47, 1-10, 2014 | 847 | 2014 |
DNorm: disease name normalization with pairwise learning to rank R Leaman, R Islamaj Doğan, Z Lu Bioinformatics 29 (22), 2909-2917, 2013 | 538 | 2013 |
Understanding PubMed® user search behavior through log analysis RI Dogan, GC Murray, A Névéol, Z Lu Database: the journal of biological databases and curation 2009, 2009 | 352 | 2009 |
SplicePort—an interactive splice-site analysis tool RI Dogan, L Getoor, WJ Wilbur, SM Mount Nucleic acids research 35 (suppl_2), W285-W291, 2007 | 240 | 2007 |
BioC: a minimalist approach to interoperability for biomedical text processing DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ... Database 2013, 2013 | 204 | 2013 |
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12, 1-31, 2011 | 193 | 2011 |
Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction A Névéol, RI Doğan, Z Lu Journal of biomedical informatics 44 (2), 310-318, 2011 | 108 | 2011 |
Author name disambiguation for p ub m ed W Liu, R Islamaj Doğan, S Kim, DC Comeau, W Kim, L Yeganova, Z Lu, ... Journal of the Association for Information Science and Technology 65 (4 …, 2014 | 103 | 2014 |
An improved corpus of disease mentions in PubMed citations RI Dogan, Z Lu BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language …, 2012 | 93 | 2012 |
Opportunities and challenges for ChatGPT and large language models in biomedicine and health S Tian, Q Jin, L Yeganova, PT Lai, Q Zhu, X Chen, Y Yang, Q Chen, ... Briefings in Bioinformatics 25 (1), bbad493, 2024 | 70 | 2024 |
PMC text mining subset in BioC: about three million full-text articles and growing DC Comeau, CH Wei, R Islamaj Doğan, Z Lu Bioinformatics 35 (18), 3533-3535, 2019 | 60 | 2019 |
BioNLP shared task 2011: Supporting resources P Stenetorp, G Topić, S Pyysalo, T Ohta, JD Kim, J Tsujii Proceedings of BioNLP shared task 2011 workshop, 112-120, 2011 | 55 | 2011 |
NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature R Islamaj, R Leaman, S Kim, D Kwon, CH Wei, DC Comeau, Y Peng, ... Scientific data 8 (1), 91, 2021 | 50 | 2021 |
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine R Islamaj Doğan, S Kim, A Chatr-Aryamontri, CH Wei, DC Comeau, ... Database 2019, bay147, 2019 | 49 | 2019 |
TeamTat: a collaborative text annotation tool R Islamaj, D Kwon, S Kim, Z Lu Nucleic acids research 48 (W1), W5-W11, 2020 | 48 | 2020 |
An Inference Method for Disease Name Normalization R Islamaj Dogan, Z Lu 2012 AAAI Fall Symposium Series, 2012 | 47 | 2012 |
Author keywords in biomedical journal articles A Névéol, RI Doğan, Z Lu AMIA annual symposium proceedings 2010, 537, 2010 | 47 | 2010 |
Evolving use of ancestry, ethnicity, and race in genetics research—A survey spanning seven decades YJJ Byeon, R Islamaj, L Yeganova, WJ Wilbur, Z Lu, LC Brody, ... The American Journal of Human Genetics 108 (12), 2215-2223, 2021 | 44 | 2021 |
An evolutionary algorithm approach for feature generation from sequence data and its application to DNA splice site prediction U Kamath, J Compton, R Islamaj-Doğan, KA De Jong, A Shehu IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (5 …, 2012 | 43 | 2012 |
Extracting Rx information from clinical narrative JG Mork, O Bodenreider, D Demner-Fushman, RI Doğan, FM Lang, Z Lu, ... Journal of the American Medical Informatics Association 17 (5), 536-539, 2010 | 36 | 2010 |