A taxonomy of bacterial microcompartment loci constructed by a novel scoring method SD Axen, O Erbilgin, CA Kerfeld PLoS computational biology 10 (10), e1003898, 2014 | 245 | 2014 |
Bacterial microcompartments and the modular construction of microbial metabolism CA Kerfeld, O Erbilgin Trends in microbiology 23 (1), 22-34, 2015 | 175 | 2015 |
Characterization of a planctomycetal organelle: a novel bacterial microcompartment for the aerobic degradation of plant saccharides O Erbilgin, KL McDonald, CA Kerfeld Applied and environmental microbiology 80 (7), 2193-2205, 2014 | 130 | 2014 |
Glyoxylate metabolism is a key feature of the metabolic degradation of 1, 4-dioxane by Pseudonocardia dioxanivorans strain CB1190 A Grostern, CM Sales, WQ Zhuang, O Erbilgin, L Alvarez-Cohen Applied and environmental microbiology 78 (9), 3298-3308, 2012 | 113 | 2012 |
Bacterial microcompartment assembly: The key role of encapsulation peptides C Aussignargues, BC Paasch, R Gonzalez-Esquer, O Erbilgin, CA Kerfeld Communicative & integrative biology 8 (3), e1039755, 2015 | 93 | 2015 |
Bioinformatic characterization of glycyl radical enzyme-associated bacterial microcompartments J Zarzycki, O Erbilgin, CA Kerfeld Applied and environmental microbiology 81 (24), 8315-8329, 2015 | 58 | 2015 |
The structural basis of coenzyme A recycling in a bacterial organelle O Erbilgin, M Sutter, CA Kerfeld PLoS biology 14 (3), e1002399, 2016 | 41 | 2016 |
Dynamic substrate preferences predict metabolic properties of a simple microbial consortium O Erbilgin, BP Bowen, SM Kosina, S Jenkins, RK Lau, TR Northen BMC bioinformatics 18, 1-12, 2017 | 31 | 2017 |
MAGI: a method for metabolite annotation and gene integration O Erbilgin, O Rübel, KB Louie, M Trinh, M Raad, T Wildish, D Udwary, ... ACS chemical biology 14 (4), 704-714, 2019 | 30 | 2019 |
Bacterial microcompartment assembly: the key role of encapsulation peptides. Commun Integr Biol 8: e1039755 C Aussignargues, BC Paasch, R Gonzalez-Esquer, O Erbilgin, CA Kerfeld | 7 | 2015 |
An automated scientist to design and optimize microbial strains for the industrial production of small molecules AH Singh, BB Kaufmann-Malaga, JA Lerman, DP Dougherty, Y Zhang, ... bioRxiv, 2023.01. 03.521657, 2023 | 5 | 2023 |
Metabolite, annotation, and gene integration system and method O Erbilgin, BP Bowen, TR Northen, DE Markus, O Ruebel US Patent 11,948,662, 2024 | 2 | 2024 |
Automated Biochemical Reaction Coder (Reactionizer) v1 BP Bowen, O Erbilgin Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States), 2018 | | 2018 |
Metabolites Annotations and Genes Integrated (MAGI) v1. 0 B Bowen, O Erbilgin, O Ruebel Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States), 2017 | | 2017 |
Predicting Coculture Substrate Depletion (PCSD) v1 B Bowen, O Erbilgin Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States), 2017 | | 2017 |
A Journey to the Center of a Bacterial Organelle O Erbilgin University of California, Berkeley, 2015 | | 2015 |
Characterization of a Planctomycetal O Erbilgin, KL McDonald, CA Kerfeld | | 2014 |
Analysis of gene expression in Pseudonocardia dioxanivorans strain CB1190 during growth with dioxane, glycolate or pyruvate A Grostern, CM Sales, WQ Zhuang, O Erbilgin, L Alvarez-Cohen | | 2012 |
Author Contributions 15 O Erbilgin, O Rübel, KB Louie, M Trinh, M de Raad Metabolomics 22, 23, 0 | | |