Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data J Bengtsson‐Palme, M Ryberg, M Hartmann, S Branco, Z Wang, A Godhe, ... Methods in ecology and evolution 4 (10), 914-919, 2013 | 1236 | 2013 |
Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification RH Nilsson, E Kristiansson, M Ryberg, N Hallenberg, KH Larsson Evolutionary bioinformatics 4, EBO. S653, 2008 | 1066 | 2008 |
Environmental factors influencing the development and spread of antibiotic resistance J Bengtsson-Palme, E Kristiansson, DGJ Larsson FEMS microbiology reviews 42 (1), fux053, 2018 | 1054 | 2018 |
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective RH Nilsson, M Ryberg, E Kristiansson, K Abarenkov, KH Larsson, ... PloS one 1 (1), e59, 2006 | 793 | 2006 |
Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential C Pal, J Bengtsson-Palme, E Kristiansson, DGJ Larsson BMC genomics 16, 1-14, 2015 | 757 | 2015 |
Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements E Kristiansson, J Fick, A Janzon, R Grabic, C Rutgersson, B Weijdegård, ... PloS one 6 (2), e17038, 2011 | 670 | 2011 |
BacMet: antibacterial biocide and metal resistance genes database C Pal, J Bengtsson-Palme, C Rensing, E Kristiansson, DGJ Larsson Nucleic acids research 42 (D1), D737-D743, 2014 | 652 | 2014 |
Evolutionary conservation of human drug targets in organisms used for environmental risk assessments L Gunnarsson, A Jauhiainen, E Kristiansson, O Nerman, DGJ Larsson Environmental science & technology 42 (15), 5807-5813, 2008 | 611 | 2008 |
The structure and diversity of human, animal and environmental resistomes C Pal, J Bengtsson-Palme, E Kristiansson, DGJ Larsson Microbiome 4, 1-15, 2016 | 439 | 2016 |
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies RH Nilsson, M Ryberg, K Abarenkov, E Sjökvist, E Kristiansson FEMS Microbiology Letters 296 (1), 97-101, 2009 | 353 | 2009 |
Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India J Bengtsson-Palme, F Boulund, J Fick, E Kristiansson, DGJ Larsson Frontiers in microbiology 5, 648, 2014 | 324 | 2014 |
Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics J Bengtsson-Palme, R Hammaren, C Pal, M Östman, B Björlenius, ... Science of the Total Environment 572, 697-712, 2016 | 292 | 2016 |
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts RH Nilsson, L Tedersoo, M Ryberg, E Kristiansson, M Hartmann, ... Microbes and environments 30 (2), 145-150, 2015 | 266 | 2015 |
The human gut microbiome as a transporter of antibiotic resistance genes between continents J Bengtsson-Palme, M Angelin, M Huss, S Kjellqvist, E Kristiansson, ... Antimicrobial agents and chemotherapy 59 (10), 6551-6560, 2015 | 244 | 2015 |
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences RH Nilsson, L Tedersoo, K Abarenkov, M Ryberg, E Kristiansson, ... MycoKeys 4, 37-63, 2012 | 227 | 2012 |
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology RH Nilsson, V Veldre, M Hartmann, M Unterseher, A Amend, J Bergsten, ... fungal ecology 3 (4), 284-287, 2010 | 222 | 2010 |
Mining metadata from unidentified ITS sequences in GenBank: A case study in Inocybe (Basidiomycota) M Ryberg, RH Nilsson, E Kristiansson, M Töpel, S Jacobsson, E Larsson BMC Evolutionary Biology 8, 1-14, 2008 | 190 | 2008 |
Fluoroquinolones and qnr Genes in Sediment, Water, Soil, and Human Fecal Flora in an Environment Polluted by Manufacturing Discharges C Rutgersson, J Fick, N Marathe, E Kristiansson, A Janzon, M Angelin, ... Environmental science & technology 48 (14), 7825-7832, 2014 | 187 | 2014 |
Untreated urban waste contaminates Indian river sediments with resistance genes to last resort antibiotics NP Marathe, C Pal, SS Gaikwad, V Jonsson, E Kristiansson, DGJ Larsson Water research 124, 388-397, 2017 | 177 | 2017 |
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes E Kristiansson, P Hugenholtz, D Dalevi Bioinformatics 25 (20), 2737-2738, 2009 | 158 | 2009 |