gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations O Serçinoğlu, P Ozbek Nucleic acids research 46 (W1), W554-W562, 2018 | 92 | 2018 |
Sequence-structure-function relationships in class I MHC: a local frustration perspective O Serçinoğlu, P Ozbek PLOS ONE 15 (5), e0232849, 2020 | 36 | 2020 |
ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism RM Aydınkal, O Serçinoğlu, P Ozbek Nucleic acids research 47 (W1), W471-W476, 2019 | 18 | 2019 |
In silico and in vitro assessment of androgen receptor antagonists O Serçinoğlu, C Bereketoglu, PE Olsson, A Pradhan Computational Biology and Chemistry 92, 107490, 2021 | 14 | 2021 |
In Silico Databases and Tools for Drug Repurposing O Serçinoğlu, PO Sarica In Silico Drug Design, 703-742, 2019 | 13 | 2019 |
Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles O Serçinoğlu, P Ozbek Journal of Biomolecular Structure and Dynamics 36 (3), 724-740, 2018 | 12 | 2018 |
Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor–Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach … EN Bingol, O Sercinoglu, P Ozbek Journal of Chemical Information and Modeling 61 (5), 2444-2453, 2021 | 8 | 2021 |
How do mutations and allosteric inhibitors modulate caspase-7 activity? A molecular dynamics study EN Bingöl, O Serçinoğlu, P Ozbek Journal of Biomolecular Structure and Dynamics, 2018 | 5 | 2018 |
DoE of fed-batchprocesses – model-based design and experimental evaluation O Sercinoglu, O Platas Barradas, V Sandig, AP Zeng, R Pörtner BMC proceedings 5 (Suppl 8), P46, 2011 | 4 | 2011 |
Computational investigation of peptide binding stabilities of HLA-B* 27 and HLA-B* 44 alleles A Bunsuz, O Serçinoğlu, P Ozbek Computational Biology and Chemistry 84, 107195, 2020 | 3 | 2020 |
A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis O Serçinoğlu, G Özcan, ZK Kabaş, P Ozbek Journal of computer-aided molecular design 30, 569-581, 2016 | 3 | 2016 |
HLA Proteinlerinin GNM Metodu ile Dinamik Karakterizasyonu Dynamic Characterization of HLA Molecules by GNM O Serçinoğlu, P Özbek Dokuz Eylul Univ. Eng. J. Sci. Eng 20, 201-211, 2018 | 2 | 2018 |
HLA Moleküllerinde Peptit Ligandlarının Kompleks Stabilitesine Olan Etkisinin Araştırılması A BUNSUZ, O SERÇİNOĞLU, P ÖZBEK Marmara Fen Bilimleri Dergisi 30 (4), 403-414, 2018 | 2 | 2018 |
Non-apoptotic cell death induction via sapogenin based supramolecular particles G Üner, E Bedir, O Serçinoğlu, PB Kırmızıbayrak Scientific Reports 12 (1), 13834, 2022 | 1 | 2022 |
Sapogenin based self-assembly structures activating a non-apoptotic cell death via multiple pathways G Üner, E Bedir, O Serçinoğlu, PB Kırmızıbayrak bioRxiv, 2021.09. 07.459231, 2021 | 1 | 2021 |
Identification of novel inhibitors of the ABC transporter BmrA O Serçinoğlu, D Senturk, FEA Kaya, FG Avci, T Tomašič, P Ozbek, ... Bioorganic Chemistry 105, 104452, 2020 | 1 | 2020 |
HLA Proteinlerinin GNM Metodu ile Dinamik Karakterizasyonu O SERÇİNOĞLU, P ÖZBEK Dokuz Eylül Üniversitesi Mühendislik Fakültesi Fen ve Mühendislik Dergisi 20 …, 2018 | 1 | 2018 |
Bioassay-guided isolation studies on mesophilic Actinomycete M-33–5 possessing antibacterial and cytotoxic activities M Urgen, F Kocabaş, A Nalbantsoy, O Serçinoğlu, E Hames-Kocabaş, ... Planta Medica 75 (09), PA54, 2009 | 1 | 2009 |
Unraveling the ligand specificity and promiscuity of the Staphylococcus aureus NorA efflux pump: a computational study EB Işık, O Serçinoğlu Journal of Biomolecular Structure and Dynamics, 1-12, 2024 | | 2024 |
In Vitro, In Vivo, and In Silico Analysis of Pyraclostrobin and Cyprodinil and Their Mixture Reveal New Targets and Signaling Mechanisms Y Kim, C Bereketoglu, O Sercinoglu, A Pradhan Chemical Research in Toxicology, 2024 | | 2024 |