| HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes JC Kasmanas, A Bartholomäus, FB Corrêa, T Tal, N Jehmlich, G Herberth, ... Nucleic Acids Research 49 (D1), D743-D750, 2021 | 45 | 2021 |
| Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture B Liu, H Sträuber, J Saraiva, H Harms, SG Silva, JC Kasmanas, ... Microbiome 10 (1), 48, 2022 | 22 | 2022 |
| The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream S Haenelt, G Wang, JC Kasmanas, F Musat, HH Richnow, UN da Rocha, ... Frontiers in microbiology 14, 1058350, 2023 | 20 | 2023 |
| Explainable machine learning for breast cancer diagnosis T Brito-Sarracino, MR dos Santos, EF Antunes, IB de Andrade Santos, ... 2019 8th Brazilian Conference on Intelligent Systems (BRACIS), 681-686, 2019 | 15 | 2019 |
| MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes MK Nata’ala, AP Avila Santos, J Coelho Kasmanas, A Bartholomäus, ... Environmental Microbiome 17 (1), 57, 2022 | 10 | 2022 |
| MuDoGeR: Multi-domain genome recovery from metagenomes made easy UN da Rocha, JC Kasmanas, R Kallies, JP Saraiva, RB Toscan, ... bioRxiv, 2022.06. 21.496983, 2022 | 8 | 2022 |
| OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes JP Saraiva, A Bartholomäus, R Kallies, M Gomes, M Bicalho, ... Life science alliance 4 (12), 2021 | 4 | 2021 |
| MuDoGeR: Multi‐Domain Genome recovery from metagenomes made easy U Rocha, J Coelho Kasmanas, R Kallies, JP Saraiva, RB Toscan, ... Molecular Ecology Resources 24 (2), e13904, 2024 | 2 | 2024 |
| The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes AP Avila Santos, M Kabiru Nata’ala, JC Kasmanas, A Bartholomäus, ... Animal Microbiome 5 (1), 48, 2023 | 1 | 2023 |
| Corrigendum: The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream S Haenelt, G Wang, JC Kasmanas, F Musat, HH Richnow, UN da Rocha, ... Frontiers in Microbiology 14, 1208555, 2023 | 1 | 2023 |
| Simulation of 69 microbial communities indicates sequencing depth and false positives are major drivers of bias in Prokaryotic metagenome-assembled genome recovery U Nunes da Rocha, JC Kasmanas, R Toscan, DS Sanches, ... bioRxiv, 2023.05. 02.539054, 2023 | | 2023 |
| Using machine learning to predict bioreactor productivity B Liu, H Sträuber, J Saraiva, H Harms, SG Silva, JC Kasmanas, ... | | 2022 |
| MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes R UNd, MK Nata’ala, APA Santos, JC Kasmanas, A Bartholomäus, ... | | 2022 |
| Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture B Liu, H Sträuber, JP Saraiva, H Harms, SG Silva, JC Kasmanas, ... | | 2021 |
| OrtSuite–a flexible pipeline for annotation of ecosystem processes and prediction of putative microbial interactions JP Saraiva, M Gomes, R Kallies, C Vogt, A Chatzinotas, P Stadler, O Dias, ... | | 2020 |
