| Computational modeling of the cell-autonomous mammalian circadian oscillator OA Podkolodnaya, NN Tverdokhleb, NL Podkolodnyy BMC systems biology 11 (Suppl 1), 27-42, 2017 | 41 | 2017 |
| Computer and statistical analysis of transcription factor binding and chromatin modifications by ChIP-seq data in embryonic stem cell Y Orlov, H Xu, D Afonnikov, B Lim, JC Heng, P Yuan, M Chen, J Yan, ... Journal of Integrative bioinformatics 9 (2), 88-100, 2012 | 15 | 2012 |
| Mechanical behavior of cells within a cell-based model of wheat leaf growth U Zubairova, S Nikolaev, A Penenko, N Podkolodnyy, S Golushko, ... Frontiers in plant science 7, 1878, 2016 | 13 | 2016 |
| Plant_SNP_TATA_Z-Tester: A Web service that unequivocally estimates the impact of proximal promoter mutations on plant gene expression D Rasskazov, I Chadaeva, E Sharypova, K Zolotareva, B Khandaev, ... International Journal of Molecular Sciences 23 (15), 8684, 2022 | 12 | 2022 |
| Relatively conserved common short sequences in transcription factor binding sites and miRNA P Putta, YL Orlov, NL Podkolodnyy, CK Mitra Вавиловский журнал генетики и селекции 15 (4), 750-756, 2011 | 11 | 2011 |
| Program complex SNP-MED for analysis of single-nucleotide polymorphism (SNP) effects on the function of genes associated with socially significant diseases NL Podkolodnyy, DA Afonnikov, YY Vaskin, LO Bryzgalov, VA Ivanisenko, ... Russian Journal of Genetics: Applied Research 4, 159-167, 2014 | 9 | 2014 |
| TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes NA Kolchanov, EV Ignatieva, OA Podkolodnaya, EA Ananko, ... Intelligent Data Analysis 12 (5), 443-461, 2008 | 9 | 2008 |
| ICGenomics: a program complex for analysis of symbol sequences in genomics YL Orlov, AO Bragin, IV Medvedeva, KV Gunbin, PS Demenkov, ... Vavilov Journal of Genetics and Breeding 16 (4/1), 732-741, 2014 | 6 | 2014 |
| Visualization of chromosome-specific DNA sequences by fluorescence in situ hybridization of microdissection DNA probes with metaphase chromosomes AG Bogomolov, KS Zadesenets, TV Karamysheva, NL Podkolodnyy, ... Russian Journal of Genetics: Applied Research 2, 413-420, 2012 | 6 | 2012 |
| On a numerical model of a circadian oscillator AA Akinshin, NB Ayupova, VP Golubyatnikov, NE Kirillova, ... Numerical Analysis and Applications 15 (3), 187-196, 2022 | 5 | 2022 |
| Ontologies in bioinformatics and systems biology NL Podkolodnyy, OA Podkolodnaya Russian Journal of Genetics: Applied Research 6, 749-758, 2016 | 5 | 2016 |
| The mammalian circadian clock: Gene regulatory network and computer analysis OA Podkolodnaya, NN Podkolodnaya, NL Podkolodnyy Russian Journal of Genetics: Applied Research 5, 354-362, 2015 | 4 | 2015 |
| Analysis of the circadian rhythm of biological processes in mouse liver and kidney IN Podkolodnyy, NN Tverdokhleb, OA Podkolodnaya Vavilov Journal of Genetics and Breeding 21 (8), 903-910, 2018 | 3 | 2018 |
| THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSIS OA Podkolodnaya, NN Podkolodnaya, NL Podkolodnyy Vavilov Journal of Genetics and Breeding 18 (4/2), 928-938, 2015 | 3 | 2015 |
| Routes of nanoparticle uptake into mammalian organisms, their biocompatibility and cellular effects OA Podkolodnaya, EV Ignatieva, NL Podkolodnyy, NA Kolchanov Biology Bulletin Reviews 2, 279-289, 2012 | 3 | 2012 |
| A database for analysis of the organizational features of the promoter regions in the co-expressed groups of genes NL Podkolodnyy, SS Nechkin, EV Ignatieva Proc. of the Sixth Int. Conf. on Bioinformatics of Genome Regulation and …, 2008 | 3 | 2008 |
| Candidate SNP markers significantly altering the affinity of TATA-binding protein for the promoters of human hub genes for atherogenesis, atherosclerosis and atheroprotection A Bogomolov, S Filonov, I Chadaeva, D Rasskazov, B Khandaev, ... International Journal of Molecular Sciences 24 (10), 9010, 2023 | 2 | 2023 |
| On conditions for the existence of cycles in two models of a circadian oscillator of mammals VP Golubyatnikov, OA Podkolodnaya, NL Podkolodnyy, NB Ayupova, ... Journal of Applied and Industrial Mathematics 15 (4), 597-608, 2021 | 2 | 2021 |
| Computational model for mammalian circadian oscillator: interacting with NAD+/SIRT1 pathway and age-related changes in gene expression of circadian oscillator NL Podkolodnyy, NN Tverdokhleb, OA Podkolodnaya Vavilov Journal of Genetics and Breeding 20 (6), 848-856, 2017 | 2 | 2017 |
| New facilities of the MGSmodeller FV Kazantsev, IR Akberdin, NL Podkolodnyy, VA Likhoshvai Vavilov Journal of Genetics and Breeding 16 (4/1), 799-804, 2014 | 2 | 2014 |
