Detection and localization of surgically resectable cancers with a multi-analyte blood test JD Cohen, L Li, Y Wang, C Thoburn, B Afsari, L Danilova, C Douville, ... Science 359 (6378), 926-930, 2018 | 2435 | 2018 |
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016 | 246 | 2016 |
Evaluation of liquid from the Papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers Y Wang, L Li, C Douville, JD Cohen, TT Yen, I Kinde, K Sundfelt, SK Kjær, ... Science translational medicine 10 (433), eaap8793, 2018 | 218 | 2018 |
Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy SU Springer, CH Chen, MDC Rodriguez Pena, L Li, C Douville, Y Wang, ... Elife 7, e32143, 2018 | 165 | 2018 |
A multimodality test to guide the management of patients with a pancreatic cyst S Springer, DL Masica, M Dal Molin, C Douville, CJ Thoburn, B Afsari, L Li, ... Science translational medicine 11 (501), eaav4772, 2019 | 144 | 2019 |
Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks DZ Kelley, EL Flam, E Izumchenko, LV Danilova, HA Wulf, T Guo, ... Cancer research 77 (23), 6538-6550, 2017 | 58 | 2017 |
switchBox: an R package for k–Top Scoring Pairs classifier development B Afsari, EJ Fertig, D Geman, L Marchionni Bioinformatics 31 (2), 273-274, 2015 | 54 | 2015 |
A simple and reproducible breast cancer prognostic test L Marchionni, B Afsari, D Geman, JT Leek BMC genomics 14, 1-7, 2013 | 52 | 2013 |
The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations X Lin, B Afsari, L Marchionni, L Cope, G Parmigiani, D Naiman, D Geman BMC bioinformatics 10, 1-18, 2009 | 47 | 2009 |
Learning Dysregulated Pathways in Cancers from Differential Variability Analysis B Afsari, D Geman, EJ Fertig Cancer Informatics 13 (S5), 61-67, 2014 | 44 | 2014 |
Rank Discriminants for Predicting Phenotypes from RNA Expression B Afsari, UB Neto, D Geman Annals of Applied Statistics 8 (3), 1469-1491, 2014 | 38 | 2014 |
A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers T Guo, A Sakai, B Afsari, M Considine, L Danilova, AV Favorov, ... Cancer research 77 (19), 5248-5258, 2017 | 36 | 2017 |
Differential variation analysis enables detection of tumor heterogeneity using single-cell RNA-sequencing data EF Davis-Marcisak, TD Sherman, P Orugunta, GL Stein-O'Brien, ... Cancer research 79 (19), 5102-5112, 2019 | 35 | 2019 |
A community challenge for inferring genetic predictors of gene essentialities through analysis of a functional screen of cancer cell lines M Gönen, BA Weir, GS Cowley, F Vazquez, Y Guan, A Jaiswal, ... Cell systems 5 (5), 485-497. e3, 2017 | 24 | 2017 |
Microarray classification from several two-gene expression comparisons D Geman, B Afsari, AC Tan, DQ Naiman Machine Learning and Applications, 2008. ICMLA'08. Seventh International …, 2008 | 23 | 2008 |
Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer B Afsari, A Kuo, YF Zhang, L Li, K Lahouel, L Danilova, A Favorov, ... Elife 10, e61082, 2021 | 16 | 2021 |
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer B Afsari, T Guo, M Considine, L Florea, LT Kagohara, GL Stein-O’Brien, ... Bioinformatics 34 (11), 1859-1867, 2018 | 15 | 2018 |
Newly identified members of FGFR1 splice variants engage in cross-talk with AXL/AKT axis in salivary adenoid cystic carcinoma JO Humtsoe, HS Kim, B Leonard, S Ling, B Keam, L Marchionni, B Afsari, ... Cancer Research 81 (4), 1001-1013, 2021 | 14 | 2021 |
A simple Transport protocol for wireless sensor Networks VS Mansouri, B Afsari, H Shahmansouri 2005 International Conference on Intelligent Sensors, Sensor Networks and …, 2005 | 12 | 2005 |
Consortium HPN-DREAM SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y …, 2016 | 10 | 2016 |